Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A14
         (444 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB007919-1|BAA32295.3| 1182|Homo sapiens KIAA0450 protein protein.     29   7.2  
AF038563-1|AAC05370.1| 1455|Homo sapiens membrane associated gua...    29   9.6  

>AB007919-1|BAA32295.3| 1182|Homo sapiens KIAA0450 protein protein.
          Length = 1182

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 376 MTSARVASSSCWCSVRGSAFRGGPHRA---GGSAGRW 275
           + SA    + C CS  GS   GG HRA    G AG W
Sbjct: 11  LRSAWALRAGCPCSGWGSGDAGGQHRARCPSGRAGNW 47


>AF038563-1|AAC05370.1| 1455|Homo sapiens membrane associated
            guanylate kinase 2 protein.
          Length = 1455

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +2

Query: 134  REAA*ALVNSAECRPSGGYCAPAEA--SGGPAWAVGTEWRL---TRPGNATDPPTGTAAR 298
            +EA  A   S  CR  G   APA A  + G + A+  E R      P +   PP G AAR
Sbjct: 1366 KEAPRAAAGSELCRREGLGAAPASADPADGGSGALAAEGRAGARAAPRSVPRPPAGAAAR 1425


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,596,611
Number of Sequences: 237096
Number of extensions: 1226551
Number of successful extensions: 4567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)