Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A14
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical pr...    33   0.093
Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical p...    27   4.6  
X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.        27   4.6  
AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical ...    27   4.6  
AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical p...    27   6.1  
AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    27   8.1  

>U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical
           protein R04B3.3 protein.
          Length = 503

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 170 CRPSGGYCAPAEASGGPAWAVGTEWRLTRPGNATDPPTGTAAR 298
           C PS   C    +SG   W +GT  R+  P    + P GTA +
Sbjct: 343 CNPSDLSCKFWRSSGNNRWEIGTSGRVANPLTGINLPPGTAQK 385


>Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical
           protein C47E12.3 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 270 LTHLPALPPARWGPPRNALPLTLHQHEELAT 362
           L +LP  PP+++ PP   LP T     E AT
Sbjct: 507 LFNLPPTPPSQYDPPLKPLPRTNSSFCETAT 537


>Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEKLYAACCAIL 50
           E +RC  + +  FYAP NGR  ++    ++   +L
Sbjct: 187 EGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLL 221


>Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEKLYAACCAIL 50
           E +RC  + +  FYAP NGR  ++    ++   +L
Sbjct: 189 EGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLL 223


>X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEKLYAACCAIL 50
           E +RC  + +  FYAP NGR  ++    ++   +L
Sbjct: 189 EGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLL 223


>AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEKLYAACCAIL 50
           E +RC  + +  FYAP NGR  ++    ++   +L
Sbjct: 187 EGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLL 221


>AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEKLYAACCAIL 50
           E +RC  + +  FYAP NGR  ++    ++   +L
Sbjct: 189 EGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLL 223


>Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEK 77
           E +RC  + +  FYAP NGR   K K
Sbjct: 187 EGTRCDRHYVQAFYAPINGRYNGKTK 212


>AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 154 ERSRCFSNTMMCFYAPYNGRSQIKEK 77
           E +RC  + +  FYAP NGR   K K
Sbjct: 187 EGTRCDRHYVQAFYAPINGRYNGKTK 212


>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 176 PSGGYCAPAEASGGPAWAVGTEWRLTRPGNATDPPTGTA 292
           P+GGY AP + + GPA     +  +   GN  D P   A
Sbjct: 111 PAGGYQAPVQPAPGPAEVAPAQ--VQAGGNYQDAPAQVA 147


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 176 PSGGYCAPAEASGGPAWAVGTEWRLTRPGNATDPPTGTA 292
           P+GGY AP + + GPA     +  +   GN  D P   A
Sbjct: 111 PAGGYQAPVQPAPGPAEVAPAQ--VQAGGNYQDAPAQVA 147


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 VADRVVVIGDEQPA*DDIGARRELLVLVQRE 330
           + D  VV+ DE  A  D GAR+++  LV+RE
Sbjct: 694 IGDSEVVLLDEPTAGMDPGARQDVQKLVERE 724


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 VADRVVVIGDEQPA*DDIGARRELLVLVQRE 330
           + D  VV+ DE  A  D GAR+++  LV+RE
Sbjct: 681 IGDSEVVLLDEPTAGMDPGARQDVQKLVERE 711


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 VADRVVVIGDEQPA*DDIGARRELLVLVQRE 330
           + D  VV+ DE  A  D GAR+++  LV+RE
Sbjct: 681 IGDSEVVLLDEPTAGMDPGARQDVQKLVERE 711


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 264 FPGRVNRHSVPTAHAGPPLASAGAQYPP 181
           FPG    H  P  + GPP   A A  PP
Sbjct: 145 FPGPPGPHRPPEHYPGPPRPQAPAAPPP 172


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 261 ETRLTHLPALPPARWGPPRNALPLTLHQ 344
           + +L  LPALP     P R ALPL L Q
Sbjct: 319 QNQLRSLPALPLILLQPSRQALPLILLQ 346


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 VADRVVVIGDEQPA*DDIGARRELLVLVQRE 330
           + D  VV+ DE  A  D GAR+++  LV+RE
Sbjct: 694 IGDSEVVLLDEPTAGMDPGARQDVQKLVERE 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,645,320
Number of Sequences: 27780
Number of extensions: 152855
Number of successful extensions: 521
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)