Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A14
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 282 PALPPARWGPPRNALPLTLHQHEELATRAD 371
           P L P    PPR A  + +  H++ AT AD
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPAD 510


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 334 VRGSAFRGGPHRAGGSAGRW-VSRVSWAS 251
           + G++FR  P+R G   G + V    W+S
Sbjct: 365 LEGASFRSKPYRFGIQNGDYVVLETEWSS 393


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 334 VRGSAFRGGPHRAGGSAGRW-VSRVSWAS 251
           + G++FR  P+R G   G + V    W+S
Sbjct: 71  LEGASFRSKPYRFGIQNGDYVVLETEWSS 99


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 394 SPITTTRSATSSRLYD 441
           S +TT++   S RLYD
Sbjct: 270 SSVTTSKMMVSPRLYD 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,087
Number of Sequences: 438
Number of extensions: 1915
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)