Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A13
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   1.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   3.4  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    24   4.5  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    23   7.9  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    23   7.9  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 PLTRYNIMGDRTCRSTYVC 279
           PL   +++ +RTC S+Y+C
Sbjct: 339 PLAPMDVLTERTCLSSYLC 357


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 135 EKIKHVYVANGRDARRPTVTDS 200
           + +K  Y+++  DAR P+V+DS
Sbjct: 145 DTLKKTYLSSENDARYPSVSDS 166


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 79  VLCFYKRFVICIPDYSINMK 138
           V+  YKRFVI  PD++  +K
Sbjct: 189 VISGYKRFVIISPDHANQLK 208


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 76  LVLCFYKRFVICIPDYSINMKKLNMCTSLTDAMRVARR*PT 198
           L L   KRF    PD S+ ++K      + DA  VARR P+
Sbjct: 142 LELAILKRF----PDASLFIEKPISAAPVEDAFAVARRLPS 178


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 275 TYVLRHVRSPIMLYRVSGRCRSPSVTVGHRRATRIASVSDVHMFNFF 135
           T ++ +  +  +LY       S ++ VGH +  ++AS+    +  FF
Sbjct: 253 TDIIENTHAMSLLYECINTIVSGNMLVGHSQCDKLASLCASKLRGFF 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,797
Number of Sequences: 5004
Number of extensions: 20470
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)