Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A13
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0461 - 14299138-14299313,14299360-14299437,14299459-142995...    26   5.2  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    26   5.2  
03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170...    25   9.2  

>05_03_0461 -
           14299138-14299313,14299360-14299437,14299459-14299583,
           14299918-14300078
          Length = 179

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 289 RGYGTRMYCGMSDLP*CYTE*VVAVGRRRSLSVTVGRRASRPLATYTCLI 140
           R  G R   G   L  CY + + A+   R      GRR SR L  +  L+
Sbjct: 104 RPRGGRFIVGKEPLHNCYGDPLPAINHPREERFIAGRRLSRKLPLHAPLL 153


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 267 TAACPISHNVIPSEWSLSVAVGHCRSPSG 181
           TA C  S    PS  + +VAVG C + SG
Sbjct: 14  TAVCAASSGAPPSPDAAAVAVGSCPTYSG 42


>03_05_0311 +
           23014666-23014806,23015454-23015959,23016661-23017051,
           23017192-23017292,23017542-23017644,23018048-23018120,
           23018244-23018659
          Length = 576

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 88  FYKRFVICIPDYSINMKKLNMCTSLTDAMRVARR*PTVTDGDRQR 222
           FY+R+  C   + I   + +         R  +    VTDGDRQR
Sbjct: 72  FYQRYA-CHAGFDIKKSRTHKAFREVCCTREGKHVSKVTDGDRQR 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,200,234
Number of Sequences: 37544
Number of extensions: 144173
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)