Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A13
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   7.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   7.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   7.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 239 LYRVSGRCRSPSVTVGHRRATRIASVSDVHMF 144
           L R+SG     SVT G R  T +A + D+H +
Sbjct: 140 LVRLSG---DGSVTYGMRFTTTLACMMDLHYY 168


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 264 AACPISHNVIPSEWSLSVAV 205
           A+ P+  + +PS++ LSV +
Sbjct: 692 ASSPLEPSAVPSKFCLSVTL 711


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  RARDAPAACIVHRLDLL 78
           R R    AC+ HRL L+
Sbjct: 51  RKRGCIEACLFHRLALM 67


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 133 YLSNNQEYKSRISYKSII 80
           Y  NN  Y  ++ YK+ I
Sbjct: 104 YNYNNNNYNKKLYYKNYI 121


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 211 RRRSLSVTVGRRASRPLATYTCLIFSYL 128
           RR++L  TV       L ++ C++  YL
Sbjct: 230 RRKTLFYTVNLILPTVLISFLCVLVFYL 257


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 203 PTATDSDHSLGITLWEI 253
           PT     +SLGI  W++
Sbjct: 231 PTPAADIYSLGIVAWQM 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,962
Number of Sequences: 438
Number of extensions: 1515
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)