Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A12
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 166 1e-42
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 166 1e-42
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 1.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.1
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 2.8
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 3.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 3.7
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 6.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 8.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 166 bits (403), Expect = 1e-42
Identities = 84/135 (62%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDQR-SVFSTWAKR---ERQWMTSHYACTXCLMS 196
M RRPARCYRYCKNKPYPKSR+ R VPD + +F KR + + H
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 TTADLSAGTGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 376
T+ L A RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR A
Sbjct: 61 TSEALEAA--RICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHA 118
Query: 377 FGKPQGTVARVRIGQ 421
FGKP G VARV IGQ
Sbjct: 119 FGKPNGLVARVNIGQ 133
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 166 bits (403), Expect = 1e-42
Identities = 84/135 (62%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDQR-SVFSTWAKR---ERQWMTSHYACTXCLMS 196
M RRPARCYRYCKNKPYPKSR+ R VPD + +F KR + + H
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 TTADLSAGTGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 376
T+ L A RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR A
Sbjct: 61 TSEALEAA--RICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHA 118
Query: 377 FGKPQGTVARVRIGQ 421
FGKP G VARV IGQ
Sbjct: 119 FGKPNGLVARVNIGQ 133
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 417 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 247
P+RT + WG+ N IP+W + PA + I +T +R + +L +FFTR
Sbjct: 81 PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137
Query: 246 YL 241
L
Sbjct: 138 KL 139
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GRFVENTMGRRPARCYRYCKNKPYPK 85
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 2.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -2
Query: 329 TFY*CG*H--GRGVVSSGCGTDLYRSSLRGTCCNRYGLFQRSDQLSYSSDXKCTHSGKSS 156
+FY C + +G+ +S C D Y+SSL +G + S L S T+SG +
Sbjct: 100 SFYSCNPYLLFKGICASSCQIDSYQSSLIDDALETFG-GRFSKGLMKSMTHLFTYSGMGA 158
Query: 155 TVALFLPKSKIRI 117
L K + I
Sbjct: 159 KCKKVLDKPSLSI 171
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 396 VPWGFPNAPRIPV 358
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 266 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 370
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 6.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 134 WAKRERQWMTSH 169
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 406 TRYCALGFPERTTHPSLEPISSSARQHFIDAD 311
T + +P+R T PSL+ + + H + D
Sbjct: 226 THFAPYYYPQRATSPSLKQVPTYLGTHVLQQD 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,134
Number of Sequences: 5004
Number of extensions: 40182
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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