Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A12
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 171 2e-43
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 157 5e-39
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 155 1e-38
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 0.90
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 28 2.7
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 27 6.3
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 6.3
11_06_0643 - 25773250-25773843 27 8.3
06_01_1064 - 8609162-8610583 27 8.3
06_01_1060 + 8522131-8523606 27 8.3
05_07_0113 + 27767826-27768284 27 8.3
04_04_0950 + 29609484-29611025 27 8.3
01_05_0783 + 25183361-25185628 27 8.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 171 bits (417), Expect = 2e-43
Identities = 82/135 (60%), Positives = 98/135 (72%), Gaps = 4/135 (2%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDQR-SVFSTWAKRERQWMTSHYACTXCLMSTTA 205
MGRRPARCYR KNKPYPKSR+CRGVPD + ++ K++ + C +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKG--VDEFPYCVHLVSWEKE 58
Query: 206 DLSAGT---GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 376
++S+ RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGA
Sbjct: 59 NVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
Query: 377 FGKPQGTVARVRIGQ 421
FGKPQGT ARV IGQ
Sbjct: 119 FGKPQGTCARVDIGQ 133
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 157 bits (380), Expect = 5e-39
Identities = 75/126 (59%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDQR-SVFSTWAKRERQWMTSHYACTXCLMSTTADLSA-GT 223
CYR KNKPYPKSR+CRGVPD + ++ K++ SH A
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 224 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 403
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 404 RVRIGQ 421
RV IGQ
Sbjct: 124 RVDIGQ 129
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 155 bits (377), Expect = 1e-38
Identities = 74/130 (56%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDQRSVFSTWAKRERQWMTSHYACTXCLMSTTADLSAG 220
P RCYR KNKPYPKSR+CRGVPD + +++R C + ++S+
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRS-ADDFPLCVHLVSWEKENVSSE 370
Query: 221 T---GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 391
RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP
Sbjct: 371 ALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPT 430
Query: 392 GTVARVRIGQ 421
GT ARVRIGQ
Sbjct: 431 GTCARVRIGQ 440
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 0.90
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 426 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 334
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 71 YSYNIDNISLVGAPLCSPQSD 9
Y Y D I L+G PLC P SD
Sbjct: 168 YLYPYDEIVLLGIPLCVPWSD 188
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 208 SERWNRPYLLQQVPRKELR*RSVPHPDETTPLP 306
SER +P L QQ P+ E++ P T P+P
Sbjct: 582 SERRPQPALQQQKPKNEIKHEKSAMPAVTPPMP 614
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 287 SGCGTDLYRSSLRGTCCNR 231
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
>11_06_0643 - 25773250-25773843
Length = 197
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 287 SGCGTDLYRSSLRGTCCNRYG 225
S TD++ +S+ CC RYG
Sbjct: 144 SSSSTDVFLNSVSARCCRRYG 164
>06_01_1064 - 8609162-8610583
Length = 473
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 118 SLVRHTPTKPRFRIRFILTISITSRWSAPHCVLHK 14
+L+ +P K RFR++ ++ + SA HCV +
Sbjct: 261 ALLSTSPAKARFRLKHVVRTLTGAEDSAHHCVFQE 295
>06_01_1060 + 8522131-8523606
Length = 491
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 118 SLVRHTPTKPRFRIRFILTISITSRWSAPHCVLHK 14
+L+ +P K RFR++ ++ + SA HCV +
Sbjct: 279 ALLSTSPAKARFRLQHVVRTLTAAEDSAYHCVFQE 313
>05_07_0113 + 27767826-27768284
Length = 152
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 17 VENTMGRRPARCYR--YCKNKPYPKSRFCRGVPDQRSVFSTWAKRERQW 157
VE+ RRPA+ R + N+ + R RG QRS+ T +RE +W
Sbjct: 72 VEDNRKRRPAKTRREDWAGNR---RGRQLRGDGWQRSICDTPVRRETRW 117
>04_04_0950 + 29609484-29611025
Length = 513
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 212 SAGTGRICCNKYLVKNCGKDQFHIRMRLHP 301
S G GR YLV G Q + + LHP
Sbjct: 370 SGGIGRAVYTDYLVVTAGSGQMDLLVALHP 399
>01_05_0783 + 25183361-25185628
Length = 755
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 254 LRGTCCNRYGLFQRSDQLSYSSDXKCTHSGKSSTVALFLPK 132
+ C YG S +S+ SD K H K ++FL K
Sbjct: 507 IANVCFKAYGYMSMSQAVSFLSDFKLGHYMKIPPKSMFLVK 547
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,431
Number of Sequences: 37544
Number of extensions: 291178
Number of successful extensions: 836
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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