Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A12
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   182   1e-46
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    32   0.15 
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    32   0.15 
Z35601-2|CAA84666.1|  259|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   3.2  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   4.3  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   5.6  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   5.6  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   5.6  
U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protea...    27   7.4  
AL132948-17|CAC51056.1|  396|Caenorhabditis elegans Hypothetical...    27   7.4  
AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF210248-1|AAF19445.1|  396|Caenorhabditis elegans aspartic prot...    27   7.4  
AF208526-1|AAF19442.1|  396|Caenorhabditis elegans aspartic prot...    27   7.4  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    26   9.8  
U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  182 bits (442), Expect = 1e-46
 Identities = 88/134 (65%), Positives = 99/134 (73%), Gaps = 4/134 (2%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDQR-SVFSTWAKRERQWMTSHYACTXCLMSTTA 205
           MGRRPARCYRY KNKPYPKSRFCRGVPD +  +F    KR    + +  AC   + +   
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRAN--VDTFPACVHMMSNERE 58

Query: 206 DLSAGT---GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 376
            LS+      RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA
Sbjct: 59  HLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGA 118

Query: 377 FGKPQGTVARVRIG 418
           +GKPQG VARV IG
Sbjct: 119 YGKPQGLVARVDIG 132


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 272  DLYRSSLRGTCCNR-YGLFQRSDQLSYSSDXKCTHSGKSSTVALFLPKSKIRIFGQAHPD 96
            D Y S + G    + Y  F   D+L ++         K+S + +F   SKI +FG  HP 
Sbjct: 1207 DTYLSGIDGLQYEKNYASFSPDDKLIFNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPH 1266

Query: 95   KTEI 84
             T+I
Sbjct: 1267 GTQI 1270


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 272  DLYRSSLRGTCCNR-YGLFQRSDQLSYSSDXKCTHSGKSSTVALFLPKSKIRIFGQAHPD 96
            D Y S + G    + Y  F   D+L ++         K+S + +F   SKI +FG  HP 
Sbjct: 1207 DTYLSGIDGLQYEKNYASFSPDDKLIFNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPH 1266

Query: 95   KTEI 84
             T+I
Sbjct: 1267 GTQI 1270


>Z35601-2|CAA84666.1|  259|Caenorhabditis elegans Hypothetical
           protein R10E9.2 protein.
          Length = 259

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 209 DQLSYSSDXKCTHSGKSSTVALFLPKSKIRIFGQAHPDKTEI*DTVYSYNIDNISLVGAP 30
           DQ ++S   K T    +  V + LP S   I    HP   E  DT+ + NI+  +L  AP
Sbjct: 108 DQEAFSLAVKFTDQYSAPQVLINLPGSATCIESMDHPVGIEELDTITAVNIEKDALTAAP 167

Query: 29  L 27
           +
Sbjct: 168 I 168


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 387 GFPNAPRIPVWSLSAPA 337
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 400 YCALGFPERTT-HPSLEPISSSARQHFIDA 314
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 400 YCALGFPERTT-HPSLEPISSSARQHFIDA 314
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 403 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 302
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 403 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 302
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 403 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 302
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protease
           protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 247 VLVATDTACSSAQISCRTHQTXSAR 173
           VL+A   ACS+A I   TH+T S R
Sbjct: 5   VLLALVAACSAAVIQVPTHKTESLR 29


>AL132948-17|CAC51056.1|  396|Caenorhabditis elegans Hypothetical
           protein Y39B6A.20 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 247 VLVATDTACSSAQISCRTHQTXSAR 173
           VL+A   ACS+A I   TH+T S R
Sbjct: 5   VLLALVAACSAAVIQVPTHKTESLR 29


>AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical
           protein Y48B6A.5 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 421 LSNTHTRYCALGFPERTTHPSLEPISSSARQHFIDADDMEGV*SHPDVELIFTAVLYEVL 242
           L++ +TRY + GF ++T     EP S +   HF D +    V    +   + TAV +   
Sbjct: 187 LTSVYTRYDSQGFYQQTESSGFEPRSPTI-THFSDVESEYMVDMEQEPLDVSTAVSFLPS 245

Query: 241 VATDT 227
           +A  T
Sbjct: 246 LAMQT 250


>AF210248-1|AAF19445.1|  396|Caenorhabditis elegans aspartic
           protease 1 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 247 VLVATDTACSSAQISCRTHQTXSAR 173
           VL+A   ACS+A I   TH+T S R
Sbjct: 5   VLLALVAACSAAVIQVPTHKTESLR 29


>AF208526-1|AAF19442.1|  396|Caenorhabditis elegans aspartic
           protease 1 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 247 VLVATDTACSSAQISCRTHQTXSAR 173
           VL+A   ACS+A I   TH+T S R
Sbjct: 5   VLLALVAACSAAVIQVPTHKTESLR 29


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 247  VLVATDTACSSAQISCRTHQTXSARIVGSHPLSLSFC 137
            V VA DT   ++  S +     S+  +G HP++  FC
Sbjct: 3415 VEVAADTLFPTSTSSIQPAMQSSSAFLGIHPMTCRFC 3451


>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 239 CNRYGLFQRSDQLSYSSDXKCTHSGKSSTVALFL---PKSKIRIF 114
           C +YG+    + L Y    KC HSG + T    L    KS +R F
Sbjct: 67  CKKYGV----NCLEYLDTVKCVHSGPNDTTIRLLHLQKKSYVRYF 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,090,863
Number of Sequences: 27780
Number of extensions: 237712
Number of successful extensions: 694
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)