Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A10
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical
           protein K03B8.2 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 390 KLNYQYENRTTRICRAITSLALAHIS 467
           K+ Y YEN  T + R + S A+AHIS
Sbjct: 94  KVFYYYENEFTSLKRELMSYAMAHIS 119


>Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical
           protein F49E12.4 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 132 YHFFFVRSFVPFSNLLQQQRLPVNVMQMSKDPYRKVCTEVNRT*L--LAAELCS 287
           + F  +   V + N++    L VNV    K PY K C  V    +  +  ELCS
Sbjct: 46  FQFKIIGDGVLYKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCS 99


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 257 AVNFSTHFTIRIL*HLHDIDRKALLLQKIRKRYKATYKKKMII 129
           AVN    F++ +   ++  D+K L LQK  ++YK   KK M I
Sbjct: 221 AVNLWVWFSLCLAKAVYKSDKKTLKLQKAEEKYK---KKNMTI 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,955
Number of Sequences: 27780
Number of extensions: 160358
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)