Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A08
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   2.8  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   3.7  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   4.9  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   6.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   6.5  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    23   8.5  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    23   8.5  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 211 RELSFRDVAYRSTDFTKIHR 270
           R+ S+RD+ +R  DF  +HR
Sbjct: 391 RDRSYRDLPWRVADFGVLHR 410


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 236 ATSRNESSLNKHVTKRT 186
           ++S +E SLN+H++KR+
Sbjct: 435 SSSTSEESLNRHISKRS 451


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 211 STNMSQRELYFFPPSIINTYG 149
           S+ +SQR +Y+  PS+   YG
Sbjct: 918 SSFLSQRNMYYANPSLCYVYG 938


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 206 KHVTKRTVFFPPVNNQHVRYIKKLRKQT 123
           KH+T + + F P   Q +  I K R +T
Sbjct: 335 KHITPKLLSFTPYTAQEISTIIKARLKT 362


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 114 FYTSLFS*LFYIPYVLIIDGGKKYSSLCDMFVEGTLVSRRRVS 242
           FYTSL +    I  + ++   +    LCD F+E     +R +S
Sbjct: 361 FYTSLLNLFKSIGAMQLVPSIESVDELCDAFLETANQEQRFLS 403


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  NRGALFYTSLFS*LFYIPYVLIIDG 173
           NRG+ F++ L + LF++  V+   G
Sbjct: 8   NRGSTFFSKLSTVLFFLCAVITFQG 32


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 224 NESSLNKHVTKRTVFFPPVNNQHVRYIKKLRKQTR 120
           +ESSL   VT  + F+PP  N   + +KK  +  R
Sbjct: 30  SESSLPPLVTTISGFYPP-ENTRFQLLKKSNQSNR 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 926,219
Number of Sequences: 5004
Number of extensions: 14318
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)