Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A08
         (285 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.          28   4.8  
BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa prot...    28   4.8  
AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens ...    28   4.8  
AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.           28   4.8  

>X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 253 SQCSDTRRRETRVPSTNMSQRELYFFPPSIINTYGI 146
           SQC+DT  +  R P T + +   Y F    +N  GI
Sbjct: 421 SQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGI 456


>BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa
           protein.
          Length = 1589

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 253 SQCSDTRRRETRVPSTNMSQRELYFFPPSIINTYGI 146
           SQC+DT  +  R P T + +   Y F    +N  GI
Sbjct: 557 SQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGI 592


>AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43332 fis, clone NT2RI3006340, highly  similar
           to Myomesin 1. ).
          Length = 1685

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 253 SQCSDTRRRETRVPSTNMSQRELYFFPPSIINTYGI 146
           SQC+DT  +  R P T + +   Y F    +N  GI
Sbjct: 557 SQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGI 592


>AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.
          Length = 1685

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 253 SQCSDTRRRETRVPSTNMSQRELYFFPPSIINTYGI 146
           SQC+DT  +  R P T + +   Y F    +N  GI
Sbjct: 557 SQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGI 592


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,028,059
Number of Sequences: 237096
Number of extensions: 426923
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)