Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A08
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical p...    26   3.8  
Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical
           protein K11C4.2 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 123 SLFS*LFYIPYVLIIDGGKKYSSLCDMFVEGTLVSRR 233
           SL   + Y+P +L++  G +Y S C +FV      RR
Sbjct: 131 SLIMKIIYVPLLLVVVLGGQYFSTCYLFVYKPHYKRR 167


>U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical
           protein F59A3.9 protein.
          Length = 482

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 RKVSAPIRDVAKREFPQQTC 199
           RK +A  R V K+E+P  TC
Sbjct: 83  RKAAAQFRAVMKQEYPDSTC 102


>Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical
           protein C07E3.3 protein.
          Length = 382

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 234 DVAKREFPQQTCHKENCIFSPRQ*STRTVYKKATKTDSCRTR 109
           D AK   P Q C  E+C        +  V +K    DS R +
Sbjct: 283 DEAKNVLPPQNCTVEHCTHVAVNDGSPVVIRKRASQDSIRDK 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,079,058
Number of Sequences: 27780
Number of extensions: 80957
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)