Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A07
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.056
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 27 0.91
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 2.8
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 25 3.7
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 3.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.8
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 25 4.8
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 6.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 8.5
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 24 8.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.056
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -3
Query: 369 DITNVEVTMVIKVEI*PRVT-VTHAKDTAFSTSAKSPESHVAVRSVYVKKPRSCACRNAT 193
D T++ V+ + P T V ++ STS K P + VA SV V S +++T
Sbjct: 423 DSTSIIVSSYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSST 482
Query: 192 CLSSHTNPSSNDFSLTKTFQSIA 124
+SS ++ SS +L+ + + ++
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVS 505
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.5 bits (58), Expect = 0.91
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 74 GGIELKQLKKLEVEFLDAIDWNVFVS 151
GGI L +L LE+ F D+N+F+S
Sbjct: 154 GGIPLHELNHLELSFFVFNDFNLFIS 179
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 77 GIELKQLKKLEVEFLDAIDWNVFVSEK-SFEDGLVWLERQVALRQAQ 214
G++ KQ +E DA+D +V V+EK +FE + LE ++L + +
Sbjct: 55 GLDSKQKANTAIEIRDALD-DVLVTEKTNFETFIPLLEDTLSLLEKE 100
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 383 EARLEISPMWK*RWLSKWRYSRG*QSPTQRTPPSARQQRVQSRMWLLGLC 234
+A EISP+ K +S R+++ + P P RQ+R + W+LG C
Sbjct: 167 QAIAEISPLMK--LVSAKRFNKSVEFPM---PLKERQRRRIALQWILGEC 211
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +1
Query: 256 RLWTLC*RAEGG----VLCVG-DCHPRLYLHFDNHR 348
RLWT C R +G V+C DC P Y+ H+
Sbjct: 1035 RLWTQCQRCQGSMHQDVICTSRDC-PIFYMRIAEHK 1069
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 185 ERQVALRQAQLRGFFTYTDLTATC 256
E Q + LRGF Y+D TA C
Sbjct: 198 ESQTIYKLCSLRGFGIYSDETAEC 221
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 376 GLRYHQCGSNDGYQ 335
GL H C +N+GYQ
Sbjct: 410 GLEIHDCSTNNGYQ 423
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 351 VTMVIKVEI*PRVTVTHAKDTAFSTSAKSPESHVAV 244
V V E+ PR+ +T K T AK P + +
Sbjct: 393 VVSVASFELDPRLNITQPKPPVMGTWAKEPNHLIGI 428
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 24.2 bits (50), Expect = 8.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 289 GVLCVGDCHPRLYLHF 336
G++C G C P +Y H+
Sbjct: 384 GIVCAGLCTPFIYWHY 399
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 24.2 bits (50), Expect = 8.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 86 LKQLKKLEVEFLDAIDWNV 142
+++L++L +LD DWN+
Sbjct: 230 MRELRRLNSAYLDMEDWNI 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,124
Number of Sequences: 5004
Number of extensions: 31471
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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