Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A07
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 30 0.67
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 30 0.67
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 1.2
02_05_0150 - 26294164-26294425,26294968-26294972 29 1.2
04_04_0732 + 27635212-27635865 29 2.0
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 28 2.7
04_04_0681 - 27225526-27225802,27227163-27227524 28 3.6
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 27 4.7
04_04_0270 - 24061852-24063264 27 4.7
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 27 6.2
11_04_0212 - 14919074-14919433,14919444-14920514 27 8.2
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 27 8.2
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 27 8.2
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.3 bits (65), Expect = 0.67
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 391 KRRKPGLRYHQCGSNDGYQSGDIAEGDSHPRKGHRLQHVSK-ESRVACGC*VCVCKET 221
K + G Y C +NDG + D +GD H+ + + + + R AC C C CK T
Sbjct: 484 KDSRHGRTYSAC-TNDGCKCPDGFKGDGV----HKCEDIDECKERTACQCKECKCKNT 536
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.3 bits (65), Expect = 0.67
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 391 KRRKPGLRYHQCGSNDGYQSGDIAEGDSHPRKGHRLQHVSK-ESRVACGC*VCVCKET 221
K + G Y C +NDG + D +GD H+ + + + + R AC C C CK T
Sbjct: 484 KDSRHGRTYSAC-TNDGCKCPDGFKGDGV----HKCEDIDECKERTACQCKECKCKNT 536
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Frame = +2
Query: 29 GEG**RHV-VQSGPAS-GGIELKQLKKLEVEFLDA---------IDWNVFVSEKSFEDGL 175
GEG H+ ++ P+ GG K KK+ + D + W F+ KSF L
Sbjct: 659 GEGEPPHLPLEFSPSPPGGFPFKSRKKVRIAIADLKYEGQPGHYVFWKGFIEAKSFILRL 718
Query: 176 VWLERQVA 199
VW++R +A
Sbjct: 719 VWMQRSIA 726
>02_05_0150 - 26294164-26294425,26294968-26294972
Length = 88
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 74 GGIELKQLKKLEVEFLDAIDWNVFVSEKSFEDGLVWLERQV 196
GGI L ++ LEV+FL + +++ V+ ++F D L+ ++
Sbjct: 13 GGISLAEMNYLEVDFLFGVGFDLNVTPETFADYCAVLQSEM 53
>04_04_0732 + 27635212-27635865
Length = 217
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 68 ASGGIELKQLKKLEVEFLDAIDWNVFVSEKSFEDGLVWLERQVA 199
A GG+ +L LE++FL + + + VS F+ LER+V+
Sbjct: 140 AVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREVS 183
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 8 ASFLPDDGEG**RHVVQSGPASGGIELKQLKKLEVEFLDAIDWNVFVSEKSFE 166
A P DG+G RH V SG AS EL L+ + + + W + E +
Sbjct: 20 AQMNPGDGDGNGRHQVASGHASADPELMNLR---IRMTNRLIWELLSREPKLQ 69
>04_04_0681 - 27225526-27225802,27227163-27227524
Length = 212
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 74 GGIELKQLKKLEVEFLDAIDWNVFVSEKSF 163
GG+ L ++ LEV+FL + +++ VS ++F
Sbjct: 132 GGVSLPEMNYLEVDFLFGVGFDLNVSPETF 161
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -2
Query: 358 CGSNDGYQSGDIAEGDSHPRKGHR----LQHVSKESRV 257
C S+DGY SG AE RK H +H+ SRV
Sbjct: 1025 CRSDDGYGSGSKAERTIDIRKSHERGGASRHIQGSSRV 1062
>04_04_0270 - 24061852-24063264
Length = 470
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 169 WISMARETSGVAASAAPRFLYIHRPNSHMRLWTL 270
WI A SGVAASA R L+ + +++W +
Sbjct: 220 WIEHADAVSGVAASADGRLLFSVSWDKTLKVWAV 253
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 297 KDTAFSTSAKSPESHVAVRSVYVKKPRSCACRNATCLSSHTNPSSNDFSLT 145
KD ++ A+ + H V + ++ R+ AC N +SS +PS+ + L+
Sbjct: 285 KDARRTSGARHDQKHEGVSGAH-ERNRAVACSNQEIVSSKDSPSNIEVVLS 334
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 355 GSNDGYQSGDIAEGDSHPRKGHRLQHVSKESRVAC 251
G+ + + +G EG+ HR QH+ + V C
Sbjct: 335 GAEEAHAAGVGGEGEGERDPAHRQQHILRHRSVGC 369
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 307 HPRKGHRLQHVSKESRVACG 248
H R+GHR H S R+ CG
Sbjct: 15 HERQGHRSVHDSSVLRIVCG 34
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 364 HQCGSNDGYQSGDIAEGDSHPRKGHRLQHVSKESRVACGC*VCVCKETSELRLPQRHLSL 185
H S SG IA+ PR+ L K+ RVA V +ET + ++ + L
Sbjct: 215 HGAESKKSDDSGQIADEKPRPRRTRVLDKTGKKIRVANKDPVSDIEETLPPK-KRKRMKL 273
Query: 184 EPY 176
+PY
Sbjct: 274 DPY 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,852
Number of Sequences: 37544
Number of extensions: 239028
Number of successful extensions: 656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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