Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A07
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical ...    36   0.016
AL132952-2|CAB63380.1|  190|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical
           protein F09G2.2 protein.
          Length = 319

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 89  KQLKKLEVEFLDAIDWNVFVSEKSFEDGLVWLERQVALRQAQLRGFFTYTDLTATCDSGL 268
           + L   E   +  +DWNV V    FE+ L  +E+ VA    +  GF TY +L        
Sbjct: 130 EDLNAKEWNLVKNLDWNVAVKNDEFENYLDNMEKWVAGSFVEKNGFMTYNELLQLSSMVP 189

Query: 269 FADVLK 286
             D++K
Sbjct: 190 IMDIVK 195


>AL132952-2|CAB63380.1|  190|Caenorhabditis elegans Hypothetical
           protein Y51H4A.2 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +1

Query: 301 VGDCHPRLYLHFDNH-RYFHIGDIS----SLASGASTFRFPEH 414
           +G   P L+ HFD H  Y H G  +        GA  F+F EH
Sbjct: 27  LGGRFPSLFSHFDPHIHYIHCGLAAPREPQRQKGALDFKFQEH 69


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -3

Query: 312  TVTHAKDTAFSTSAKSPESHVAVRSVYVKKPRSCACRNATCLSSHTNPSSNDFSLT 145
            TVT    T    S  SP +HV +R     +PRS    NAT   S+T  S    + T
Sbjct: 2974 TVTQTTTTVPYRSTSSPNNHVRMRPY---QPRSDTASNATL--SYTTDSERTSTAT 3024


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,782
Number of Sequences: 27780
Number of extensions: 183706
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)