Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A05
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 29 0.26
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 26 1.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 3.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 3.2
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 3.2
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 5.6
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 5.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 24 9.8
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 24 9.8
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 9.8
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 29.1 bits (62), Expect = 0.26
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTCVA 128
CN C C E D L + FT D S NHLTC+A
Sbjct: 180 CNLCYECIESD---ELRANCPFT--DCNSINHLTCLA 211
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 172 TPVD-FISCNHLTCVAGP*PFSLRAAIRNMMAGFVEESTWAALNEDCGTTHVFALPL 5
TP+ F+S NHLT + G F R + +++ + E + A+PL
Sbjct: 10 TPIQTFVSSNHLTMLYGLKRFGCRLYHHSKSTRYIDATAKVVSQEPAAISSTGAIPL 66
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 118 PFSLRAAIRNMMAGFVEESTWAALNEDCGTTHVFALPLV 2
P + A+RN G + ++TW ++ T V + LV
Sbjct: 557 PAAFAKAVRNHKRGLIMDTTWRDAHQSLLATRVRTIDLV 595
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 81 PASWRSPRGRHSTRTAGRRT 22
P+ R+P G HS+ TA R T
Sbjct: 131 PSKIRAPAGNHSSTTANRTT 150
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 126 PATQVRWLQDIKSTGVKRTGEGRL 197
PA RW Q I GVKR G RL
Sbjct: 883 PADYDRWCQYIFYRGVKRIGYARL 906
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 210 PSKQTKQALH*ESLV*FYNKNKVVVILCKRIKNIW 314
P++ T++ S V FY K + LC+ ++ +W
Sbjct: 302 PTELTEEEKQLRSKVLFYLKQDSFIQLCQSLERVW 336
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 152 RYKIDWGETYR*G*TIRSVTLKANQTSIALRIISVVL**KQSSRHIM 292
++ I W E G +RS + A + S++ R+ SV+ SSR IM
Sbjct: 307 QFGITWHEKLHPGTFVRSQKIPAIKASLSQRVSSVMTELGVSSRLIM 353
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 23.8 bits (49), Expect = 9.8
Identities = 17/69 (24%), Positives = 25/69 (36%)
Frame = +3
Query: 18 NTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVKRTGEGRL 197
NT P + L + KPA + N G T + + +TG +T G
Sbjct: 313 NTTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTTGGLF 372
Query: 198 SGASPSKQT 224
GA+ T
Sbjct: 373 GGAATGTGT 381
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 47 EC-RPRGLLHEAGHHIPYSGSQR 112
EC P+ LL A HH+ GSQ+
Sbjct: 207 ECPTPQSLLMRASHHMSERGSQQ 229
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 23.8 bits (49), Expect = 9.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 127 GP*PFSLRAAIRNMMAGFVEESTWAALNEDCGTTHVFALP 8
G PFSL I+N + G V + T LN+ + + FA P
Sbjct: 993 GASPFSLVIGIKNELTGSVSKYT---LNDIHESVYKFAFP 1029
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,217
Number of Sequences: 5004
Number of extensions: 28689
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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