Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A05
(396 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein. 85 8e-17
BC033799-1|AAH33799.1| 792|Homo sapiens host cell factor C2 pro... 72 6e-13
AK223342-1|BAD97062.1| 792|Homo sapiens host cell factor C2 var... 72 6e-13
AF117210-1|AAD27814.1| 792|Homo sapiens host cell factor 2 prot... 72 6e-13
AY751909-1|AAV32415.1| 47|Homo sapiens T cell receptor beta pr... 29 5.6
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 5.6
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 5.6
X55077-1|CAA38905.1| 591|Homo sapiens alpha-2 macroglobulin rec... 28 9.7
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 28 9.7
M27385-1|AAD15187.1| 133|Homo sapiens T-cell receptor beta prot... 28 9.7
L34723-1|AAA82691.1| 52|Homo sapiens T-cell receptor beta prot... 28 9.7
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 28 9.7
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 28 9.7
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 28 9.7
>X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.
Length = 1938
Score = 85.0 bits (201), Expect = 8e-17
Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIK--STGVKRT 182
G + +C+V SSLS AH+D +TKPAIIFRIAARNEKGYGPATQVRWLQ+ S+G K
Sbjct: 1857 GPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPA 1916
Query: 183 GEGRLSGASPSKQTKQA 233
+ +S K++
Sbjct: 1917 NKRPMSSPEMKSAPKKS 1933
>BC033799-1|AAH33799.1| 792|Homo sapiens host cell factor C2
protein.
Length = 792
Score = 72.1 bits (169), Expect = 6e-13
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
G +C+V L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783
>AK223342-1|BAD97062.1| 792|Homo sapiens host cell factor C2
variant protein.
Length = 792
Score = 72.1 bits (169), Expect = 6e-13
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
G +C+V L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783
>AF117210-1|AAD27814.1| 792|Homo sapiens host cell factor 2
protein.
Length = 792
Score = 72.1 bits (169), Expect = 6e-13
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
G +C+V L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783
>AY751909-1|AAV32415.1| 47|Homo sapiens T cell receptor beta
protein.
Length = 47
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 30 VPQSSLSAAHVDSSTK--PAIIFRIAARNEKGYGPATQVRWLQDIKS 164
+P +S S + S A+ F ++ NE+ +GP T++ L+D+K+
Sbjct: 1 MPNASFSTLKIQPSEPRDSAVYFCASSSNEQFFGPGTRLTVLEDLKN 47
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 138 PAWRAHSPSRCEPLYGI*WPASWRS-PRGRHSTRTAGRRTCSLYPSC 1
P+W +H+P C + W WR+ P G TR +R C SC
Sbjct: 118 PSWGSHAPGSCRTCWASPW--GWRAIPTGDDPTR---KRYCCSRCSC 159
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 138 PAWRAHSPSRCEPLYGI*WPASWRS-PRGRHSTRTAGRRTCSLYPSC 1
P+W +H+P C + W WR+ P G TR +R C SC
Sbjct: 118 PSWGSHAPGSCRTCWASPW--GWRAIPTGDDPTR---KRYCCSRCSC 159
>X55077-1|CAA38905.1| 591|Homo sapiens alpha-2 macroglobulin
receptor protein.
Length = 591
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTC 134
C+A C +G ++ + VR P+D CN+ C
Sbjct: 358 CDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLC 392
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTC 134
C+A C +G ++ + VR P+D CN+ C
Sbjct: 3632 CDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLC 3666
>M27385-1|AAD15187.1| 133|Homo sapiens T-cell receptor beta
protein.
Length = 133
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +3
Query: 48 SAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIK 161
SA ++ +STK + R+++ NE+ +GP T++ L+D+K
Sbjct: 98 SAMYLCASTKR--LGRLSSYNEQFFGPGTRLTVLEDLK 133
>L34723-1|AAA82691.1| 52|Homo sapiens T-cell receptor beta
protein.
Length = 52
Score = 28.3 bits (60), Expect = 9.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 45 LSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIK 161
L +A + ++ R+A NE+ +GP T++ L+D+K
Sbjct: 14 LESASTNQTSMYLCASRLAGNNEQFFGPGTRLTVLEDLK 52
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTC 134
C+A C +G ++ + VR P+D CN+ C
Sbjct: 3632 CDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLC 3666
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTC 134
C+A C +G ++ + VR P+D CN+ C
Sbjct: 3632 CDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLC 3666
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTC 134
C+A C +G ++ + VR P+D CN+ C
Sbjct: 1448 CDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLC 1482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,101,747
Number of Sequences: 237096
Number of extensions: 1130258
Number of successful extensions: 2488
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2488
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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