Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A05
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 77 5e-15
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 77 5e-15
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 1.6
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 1.6
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 27 4.9
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 27 4.9
U80836-13|AAB37897.1| 190|Caenorhabditis elegans Hypothetical p... 27 6.4
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.5
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 26 8.5
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 26 8.5
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 77.0 bits (181), Expect = 5e-15
Identities = 37/56 (66%), Positives = 41/56 (73%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVK 176
G C V QS+L A VD + KPAIIFRIAARNEKGYGPATQVRWLQD + V+
Sbjct: 701 GPQADCQVLQSNLGTAFVDQTNKPAIIFRIAARNEKGYGPATQVRWLQDQQKIPVR 756
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 77.0 bits (181), Expect = 5e-15
Identities = 37/56 (66%), Positives = 41/56 (73%)
Frame = +3
Query: 9 GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVK 176
G C V QS+L A VD + KPAIIFRIAARNEKGYGPATQVRWLQD + V+
Sbjct: 701 GPQADCQVLQSNLGTAFVDQTNKPAIIFRIAARNEKGYGPATQVRWLQDQQKIPVR 756
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 75 KPAIIFRIAARNEKGYGPATQV 140
K F+I ARNEKG+GP + V
Sbjct: 1016 KANYFFKIQARNEKGHGPFSSV 1037
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 75 KPAIIFRIAARNEKGYGPATQV 140
K F+I ARNEKG+GP + V
Sbjct: 1016 KANYFFKIQARNEKGHGPFSSV 1037
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 PATQVRWLQD--IKSTGVKRTGEGRLSGASPSKQTKQALH*ES 248
PATQ RWL++ TG + T + G S Q LH ES
Sbjct: 196 PATQYRWLKNGSPSGTGAEITIGTEMIGQSIQCQANNGLHDES 238
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 PATQVRWLQD--IKSTGVKRTGEGRLSGASPSKQTKQALH*ES 248
PATQ RWL++ TG + T + G S Q LH ES
Sbjct: 196 PATQYRWLKNGSPSGTGAEITIGTEMIGQSIQCQANNGLHDES 238
>U80836-13|AAB37897.1| 190|Caenorhabditis elegans Hypothetical
protein B0432.11 protein.
Length = 190
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 108 NEKGYGPATQVRWLQDIKSTGVKRTGEGRLSGASPSKQTKQALH 239
++ G GP V+WL+ K R G + G P K + H
Sbjct: 94 DKSGTGPVNSVKWLRGRKKAWKSRKGSKK--GKKPKKTETDSQH 135
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 138 VRWLQDIKSTGVKRTGEGRLSGASPSKQTKQALH*ESLV*FYNKNKVVVILCKRIKNIWL 317
+ WLQD ++TGV E S + + H E + K V LC + +W
Sbjct: 3270 LNWLQDKEATGVAMEQEDLSRADLASVKAQLQRHDEFMHGMKAVEKQVAELCHEAERLWN 3329
Query: 318 S 320
S
Sbjct: 3330 S 3330
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 138 VRWLQDIKSTGVKRTGEGRLSGASPSKQTKQALH*ESLV*FYNKNKVVVILCKRIKNIWL 317
+ WLQD ++TGV E S + + H E + K V LC + +W
Sbjct: 3270 LNWLQDKEATGVAMEQEDLSRADLASVKAQLQRHDEFMHGMKAVEKQVAELCHEAERLWN 3329
Query: 318 S 320
S
Sbjct: 3330 S 3330
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 76 FVEESTWAALNEDCGTTHVFAL 11
F E+ W A+ + TTHVFA+
Sbjct: 550 FSEDCRWLAITTNHATTHVFAV 571
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 76 FVEESTWAALNEDCGTTHVFAL 11
F E+ W A+ + TTHVFA+
Sbjct: 547 FSEDCRWLAITTNHATTHVFAV 568
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 138 VRWLQDIKSTGVKRTGEGRLSGASPSKQTKQALH*ESLV*FYNKNKVVVILCKRIKNIWL 317
+ WLQD ++TGV E S + + H E + K V LC + +W
Sbjct: 3270 LNWLQDKEATGVAMEQEDLSRADLASVKAQLQRHDEFMHGMKAVEKQVAELCHEAERLWN 3329
Query: 318 S 320
S
Sbjct: 3330 S 3330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,580,794
Number of Sequences: 27780
Number of extensions: 167491
Number of successful extensions: 406
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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