Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A04
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    88   2e-19
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    83   4e-18
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    81   3e-17
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    28   0.17 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   0.30 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   0.40 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   1.6  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    24   2.8  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    24   3.7  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    24   3.7  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    23   8.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   8.5  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    23   8.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    23   8.5  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 88.2 bits (209), Expect = 2e-19
 Identities = 39/63 (61%), Positives = 55/63 (87%)
 Frame = +3

Query: 60  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA++E+++ +ISEL+GKN+EELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 240 KLS 248
           KLS
Sbjct: 61  KLS 63


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 83.4 bits (197), Expect = 4e-18
 Identities = 36/63 (57%), Positives = 55/63 (87%)
 Frame = +3

Query: 60  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+EL+GK+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 240 KLS 248
           KL+
Sbjct: 61  KLA 63


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 80.6 bits (190), Expect = 3e-17
 Identities = 35/63 (55%), Positives = 53/63 (84%)
 Frame = +3

Query: 60  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL GK+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 240 KLS 248
           KL+
Sbjct: 61  KLA 63


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 123  DVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRGKL 245
            D EK+  ++ IE   E+L  ++   H K +E+  + GR +L
Sbjct: 1943 DFEKLKETLTIEQLKEQLTDIVEACHAKTLEQQKKTGRIEL 1983


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 126  VEKILSSVGIEADSEKLKKVISELHG 203
            V++I   VG+E DSE  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 129 EKILSSVGIEADSEKLKKVISELHGKNVEELI 224
           E +L S G+E  S+   KV S ++ K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 SPAAADVEKILS--SVGIEADSEKLKKVISELHGKNVEELIEAGRGKLS 248
           SP++  +  ++   + G   DSEK+K  +  +  K+ ++  E   GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 102 KASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVE 215
           K    AA  EKI +    +AD E+++ + ++LH K ++
Sbjct: 59  KEEQRAAHAEKIRTRRQAKADRERMELLQAKLHQKVID 96


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 225 QLTLQHFCHGARR 187
           QLTL+ FC G++R
Sbjct: 163 QLTLEEFCEGSKR 175


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 120 ADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAG 233
           +DVE I+   G       L  ++   HG +V  L+EAG
Sbjct: 66  SDVENIIKYHGSYLVGTNLWIIMDYCHGGSVRTLMEAG 103


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 247 ESLPRPASINSSTFL 203
           E+ P P+S+NSST L
Sbjct: 185 EAAPPPSSLNSSTVL 199


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 151 PTELRIFSTSAAAGDALPPNTA 86
           P   ++ S+ + AG ALP NT+
Sbjct: 438 PPRSKLISSKSEAGRALPGNTS 459


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 90  VLGGKASPAAADVE 131
           V GG A+PAAAD E
Sbjct: 71  VAGGAAAPAAADGE 84


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 189 SELHGKNVEELIEAGRGKLSFH 254
           SE+H  N+E L + G    +FH
Sbjct: 32  SEIHTPNIERLAKEGVRLTNFH 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 955,337
Number of Sequences: 5004
Number of extensions: 14619
Number of successful extensions: 38
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)