Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A04
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 77 1e-15
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 65 8e-12
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 65 8e-12
07_01_1001 - 8460467-8460799 64 1e-11
07_03_0321 + 16757414-16757743 64 2e-11
01_06_0098 - 26416768-26416998 31 0.17
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 29 0.68
12_01_0731 - 6516894-6517473,6517485-6519574 27 1.6
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 26 3.6
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 26 3.6
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 3.6
12_01_0993 - 10069179-10070057,10070708-10071049 26 4.8
11_01_0381 + 2890778-2891506 25 6.4
12_01_0736 + 6582371-6585370 25 8.4
12_01_0718 + 6339982-6342981 25 8.4
12_01_0715 - 6230393-6231559,6233234-6234553 25 8.4
12_01_0708 - 6137865-6140909 25 8.4
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 25 8.4
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 25 8.4
02_05_0992 - 33364827-33365750 25 8.4
01_06_1102 - 34541341-34541561,34541691-34541769,34541880-345419... 25 8.4
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 77.4 bits (182), Expect = 1e-15
Identities = 35/63 (55%), Positives = 50/63 (79%)
Frame = +3
Query: 60 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
M+ +AAYLLAVLGG SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 240 KLS 248
K +
Sbjct: 61 KFA 63
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 64.9 bits (151), Expect = 8e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +3
Query: 57 KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGR 236
+M++++AYLLA L G +P+A D+ IL SVG E D K++ ++S+L GK++ E+I +GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 237 GKLS 248
K +
Sbjct: 253 EKFA 256
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 64.9 bits (151), Expect = 8e-12
Identities = 28/63 (44%), Positives = 45/63 (71%)
Frame = +3
Query: 60 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
M++++AYL+A L G +SP A D+ IL SVG E D+ K++ ++S++ GK++ ELI GR
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 240 KLS 248
K +
Sbjct: 61 KFA 63
>07_01_1001 - 8460467-8460799
Length = 110
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 60 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
MR+VAAYL+A +GG ASP DV IL +VG + D +KL + ++ GK++ E++ AG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 240 KLSF 251
L+F
Sbjct: 61 MLAF 64
>07_03_0321 + 16757414-16757743
Length = 109
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 60 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAGRG 239
MR+VAAYL+A +GG ASP DV IL +VG + D +KL + ++ GK++ E++ AG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 240 KLSF 251
L+F
Sbjct: 61 MLAF 64
>01_06_0098 - 26416768-26416998
Length = 76
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 111 PAAADVEKILSSVGIEADSEKLKKVISELHGKN 209
P V KI+ +V IEADS + K ++ L GK+
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 132 KILSSVGIEADSEKLKKVISELHGKNVEELIEAG 233
++LS GI++ S K + +HG N++EL AG
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAG 707
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
PCW +K PQLL++ +S+ G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 64 VTWPRIYSPCWAAKRPQLLLMSKRSSALW 150
+ WPR W A P L S++S W
Sbjct: 132 IRWPRSRDEVWKANIPHTHLASEKSDQRW 160
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 93 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIEAG 233
+G ASPAAA+++ + + I A + V +E+ + +E + G
Sbjct: 52 IGRPASPAAAEMDTVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGG 98
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 105 ASPAAADVEKILSSVGIEADSEKLKKVISELHGKNVEELIE 227
+S D E IL EA ++LK+ + LH K+ +ELIE
Sbjct: 646 SSSTKEDNEAILQRWLPEAAFQRLKESETGLHAKSPDELIE 686
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 139 RIFSTSAAAGDALPPNTA 86
R F++SAAAGDA P N +
Sbjct: 384 RAFNSSAAAGDAYPINVS 401
>11_01_0381 + 2890778-2891506
Length = 242
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 255 HGKRACRVRPQLTLQHFCHGARR 187
HG R+C P T+ C G RR
Sbjct: 26 HGLRSCISSPSATIGTMCDGLRR 48
>12_01_0736 + 6582371-6585370
Length = 999
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
PCW +K PQL ++ +S+ G
Sbjct: 726 PCWMSKLPQLQVLVLKSNRFIG 747
>12_01_0718 + 6339982-6342981
Length = 999
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
PCW +K PQL ++ +S+ G
Sbjct: 726 PCWMSKLPQLQVLVLKSNRFIG 747
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
PCW +K PQL ++ +S+ G
Sbjct: 653 PCWMSKLPQLQVLVLKSNKFIG 674
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
PCW +K P+L +++ +S+ G
Sbjct: 742 PCWMSKLPKLQVLALKSNKFTG 763
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 117 AADVEKILSSVGIEADSEKLKKVISELHGKNVEELIE 227
A DVE V E +++ +V+ E HG E +E
Sbjct: 48 ANDVESATRRVQDEVTGKEIFQVLKEKHGDGFESFVE 84
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 88 PCWAAKRPQLLLMSKRSSALWG 153
P W + PQL ++S R+++L G
Sbjct: 171 PAWIGELPQLAVLSLRNNSLGG 192
>02_05_0992 - 33364827-33365750
Length = 307
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 151 PTELRIFSTSAAAGDALPPNTA---SKYAAT*RIF*VAKTR-NVYCRKQNVRL 5
P E R+ S+ AA GD+ P A +K A R+ TR + Y R+ VRL
Sbjct: 27 PNEFRLQSSLAACGDSAPATAADAVAKAAPDIRVLLGVLTRADKYERRALVRL 79
>01_06_1102 -
34541341-34541561,34541691-34541769,34541880-34541929,
34542291-34542576
Length = 211
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 149 HRAEDLFDISSSWGRFAAQHGE 84
H+A + F +++SW + AA H E
Sbjct: 84 HKAAETFVLANSWRKAAAAHHE 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,732,477
Number of Sequences: 37544
Number of extensions: 111749
Number of successful extensions: 398
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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