Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A03
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 121 7e-29
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 44 2e-05
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 38 8e-04
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 35 0.006
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 31 0.13
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 30 0.22
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 30 0.22
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 29 0.29
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 29 0.38
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.6
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.6
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.6
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 4.7
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 25 6.3
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 8.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 8.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.3
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 121 bits (291), Expect = 7e-29
Identities = 58/92 (63%), Positives = 72/92 (78%)
Frame = +2
Query: 71 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 250
MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K RE + +ETLSI
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 251 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKRE 346
RGNNIRYY IDD+ K + K++
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTKPKQKKK 92
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = +2
Query: 92 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 259
+KL HET VT+EL+NGS G + + MN ++ + VT ++ L+ + IRG+
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64
Query: 260 NIRY 271
+IR+
Sbjct: 65 HIRF 68
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 8e-04
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 113 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNIRY 271
+ +ELKNG +G + D MN L+ V T+ + ++ +L IRGNNI+Y
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKY 68
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 71 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV--TLKNREELQLETL 244
M F L VT+ELKN + G + VD +N L+ + V K ++ L
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 245 SIRGNNIRY 271
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 30.7 bits (66), Expect = 0.13
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +2
Query: 89 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 265
L K V ++L V+G + G D+ +N L+ + E++++ +++IRGN++
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSV 67
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 29.9 bits (64), Expect = 0.22
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 338 YPFLLVYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSKLL 201
YPF + L+ FL+ +SIL SHVYS I+ F +LL
Sbjct: 89 YPFQSITLPLMPFLE---KTESSILTISHVYSPPTIITFDGFKRLL 131
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 92 MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 214
++LSHE EL+ SV+ + VD+ N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 29.5 bits (63), Expect = 0.29
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 86 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 265
FL K+ + V I L +G G ++ +D MN L+ + + ++ IRGNN+
Sbjct: 8 FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 266 RY 271
Y
Sbjct: 68 LY 69
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 29.1 bits (62), Expect = 0.38
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 86 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 265
FL L + V + LK G GT+ VD MN L + + + L + IR NN+
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 261 LFPRILKVSNCNSSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVT 112
L PR+ ++ +++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 261 LFPRILKVSNCNSSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVT 112
L PR+ ++ +++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 261 LFPRILKVSNCNSSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVT 112
L PR+ ++ +++ F +TFT ++ T P + +PF N++ +
Sbjct: 79 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 124
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 4.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 332 FLLVYRRLIMFLKVNCPVANSILYCSHVYS--KSPIVILH 219
FLLVY + L+ N IL C HV + K ++ILH
Sbjct: 89 FLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVIILH 128
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 210 KVTFTAFRCVFMATSTPVI--VPWTTLPFFNSIVTVSWLSFIKNLTSFILLAY 58
K F F+ +F A V+ +P+T + F+N IV S+ + + LAY
Sbjct: 178 KAFFCTFQLLFYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAY 230
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 267 LILFPRILKVSNCNSSRFFKVTFTAF 190
L+ FP L + CNSS F+ F F
Sbjct: 186 LLFFPSYLILRKCNSSIKFRQIFVVF 211
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 147 WTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIE 40
W T PF+ V + WL F+ N T+ + L ++I+
Sbjct: 246 WGTSPFYYYFVRLPWL-FL-NPTTLLFLLISFVYIK 279
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 8.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -3
Query: 228 NSSRFFKVTFTAFRCVFM-ATSTP-----VIVPWTTLPFFNSIVTVSWLSFIKNLTSFIL 67
NSS T T+F + AT+TP + +P T LP ++ S+ + +T F+L
Sbjct: 620 NSSTLLSPTSTSFTSYTVSATATPTSTSHIPIP-TVLPPTQPVLEPSYREIVAFITFFLL 678
Query: 66 LAYRLIFI 43
A+ + +
Sbjct: 679 FAFIFVAV 686
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 368 YRRLEGSPPAYPFLLVYRRLIMFLKVNCPVAN 273
YR+L GS PA+ L+ R+L+++ ++ + N
Sbjct: 2178 YRQLSGSIPAFYKSLLRRKLVVWFCISVFLQN 2209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,950
Number of Sequences: 5004
Number of extensions: 30407
Number of successful extensions: 105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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