Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A03
(494 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071359-1|AAL48981.1| 124|Drosophila melanogaster RE39488p pro... 135 4e-32
AE014296-2169|AAF49893.1| 124|Drosophila melanogaster CG10753-P... 134 5e-32
AY113465-1|AAM29470.1| 151|Drosophila melanogaster RE39820p pro... 36 0.030
AF038598-1|AAB92621.1| 151|Drosophila melanogaster small nuclea... 36 0.030
AE013599-1407|AAF58566.1| 151|Drosophila melanogaster CG8427-PA... 36 0.030
AE014296-2128|AAF49929.1| 95|Drosophila melanogaster CG10418-P... 36 0.040
BT001620-1|AAN71375.1| 154|Drosophila melanogaster RE35747p pro... 34 0.092
AE014134-1871|AAF52938.3| 154|Drosophila melanogaster CG17768-P... 34 0.092
AY113474-1|AAM29479.1| 79|Drosophila melanogaster RE43665p pro... 32 0.37
AE013599-3092|AAF46645.1| 79|Drosophila melanogaster CG9344-PA... 32 0.37
AE014134-300|AAN10463.2| 383|Drosophila melanogaster CG31929-PA... 31 1.1
AE014296-247|AAN11477.1| 469|Drosophila melanogaster CG32320-PA... 28 6.0
>AY071359-1|AAL48981.1| 124|Drosophila melanogaster RE39488p
protein.
Length = 124
Score = 135 bits (326), Expect = 4e-32
Identities = 63/92 (68%), Positives = 75/92 (81%)
Frame = +2
Query: 71 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 250
MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSI 60
Query: 251 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKRE 346
RGNNIRY+ IDDTPK + K++
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKKK 92
>AE014296-2169|AAF49893.1| 124|Drosophila melanogaster CG10753-PA
protein.
Length = 124
Score = 134 bits (325), Expect = 5e-32
Identities = 63/92 (68%), Positives = 75/92 (81%)
Frame = +2
Query: 71 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 250
MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 251 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKRE 346
RGNNIRY+ IDDTPK + K++
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKKK 92
>AY113465-1|AAM29470.1| 151|Drosophila melanogaster RE39820p
protein.
Length = 151
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +2
Query: 80 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 259
++ L + +T E G V G + + MN + + VT ++ LE + IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 260 NIRYYXXXXXXXXXXXXIDDTPKGRGKREG 349
IR+ T KG G G
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTGKGLGGTAG 96
>AF038598-1|AAB92621.1| 151|Drosophila melanogaster small nuclear
ribonucleoproteinSm D3 protein.
Length = 151
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +2
Query: 80 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 259
++ L + +T E G V G + + MN + + VT ++ LE + IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 260 NIRYYXXXXXXXXXXXXIDDTPKGRGKREG 349
IR+ T KG G G
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTGKGLGGTAG 96
>AE013599-1407|AAF58566.1| 151|Drosophila melanogaster CG8427-PA
protein.
Length = 151
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +2
Query: 80 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 259
++ L + +T E G V G + + MN + + VT ++ LE + IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 260 NIRYYXXXXXXXXXXXXIDDTPKGRGKREG 349
IR+ T KG G G
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTGKGLGGTAG 96
>AE014296-2128|AAF49929.1| 95|Drosophila melanogaster CG10418-PA
protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 71 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETL 244
M F L + V +ELKN + GT+ VD +N L + VT ++ L ++
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 245 SIRGNNIRY 271
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BT001620-1|AAN71375.1| 154|Drosophila melanogaster RE35747p
protein.
Length = 154
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 119 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 271
+ELKNG +G + D MN +L+ V T K+ + ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68
>AE014134-1871|AAF52938.3| 154|Drosophila melanogaster CG17768-PA,
isoform A protein.
Length = 154
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 119 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 271
+ELKNG +G + D MN +L+ V T K+ + ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68
>AY113474-1|AAM29479.1| 79|Drosophila melanogaster RE43665p
protein.
Length = 79
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 62 ANKMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 241
+ K L +F+ ++ V ++L NG G + +D MN L+ + + + + +
Sbjct: 2 SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61
Query: 242 LSIRGNNIRY 271
IRGNN+ Y
Sbjct: 62 AFIRGNNVLY 71
>AE013599-3092|AAF46645.1| 79|Drosophila melanogaster CG9344-PA
protein.
Length = 79
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 62 ANKMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 241
+ K L +F+ ++ V ++L NG G + +D MN L+ + + + + +
Sbjct: 2 SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61
Query: 242 LSIRGNNIRY 271
IRGNN+ Y
Sbjct: 62 AFIRGNNVLY 71
>AE014134-300|AAN10463.2| 383|Drosophila melanogaster CG31929-PA
protein.
Length = 383
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 144 TTLPFFNSIVTVSWLSFIKNLTSFILLAYRL 52
T P FNS V WLS I L S++ +AY L
Sbjct: 132 TKCPKFNSFVIQKWLSVIGLLLSYLSIAYGL 162
>AE014296-247|AAN11477.1| 469|Drosophila melanogaster CG32320-PA
protein.
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 270 YLILFPRILKVSNCNSSRFFKVTF 199
Y I+ R+L +SNC ++F KV+F
Sbjct: 246 YQIMGLRVLPLSNCEDNKFVKVSF 269
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,520,086
Number of Sequences: 53049
Number of extensions: 320872
Number of successful extensions: 777
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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