Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A03
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...   118   2e-27
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    40   0.001
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    38   0.003
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    36   0.016
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    33   0.11 
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    29   1.4  
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical pr...    28   4.3  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score =  118 bits (284), Expect = 2e-27
 Identities = 61/95 (64%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +2

Query: 71  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 250
           MKLVRFLMKLSHETV IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+E ++L+TLSI
Sbjct: 1   MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60

Query: 251 RGNNIRYYXXXXXXXXXXXXIDDTP--KGRGKREG 349
           RGNNIRY             IDD P  K R  R G
Sbjct: 61  RGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 80  VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 259
           ++ L +     VT+E   G V  G ++  +  MN  L    VT ++    QL+ + IRGN
Sbjct: 8   IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67

Query: 260 NIRY 271
            IR+
Sbjct: 68  KIRF 71


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 113 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 271
           VT+E   G V  G ++  +  MN  L    VT ++    QL+ + IRGN IR+
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRF 57


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 89  LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNI 265
           L    +  + +ELKNG   +G +   D  MN HL  V  T K+ ++  ++    +RG+ I
Sbjct: 8   LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67

Query: 266 RY 271
           +Y
Sbjct: 68  KY 69


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 71  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETL 244
           M    F   L  + V +ELKN   + GT+  VD  +N  L  + V+   R    + ++  
Sbjct: 1   MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60

Query: 245 SIRGNNIRY 271
            IRG+ +RY
Sbjct: 61  FIRGSVVRY 69


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 86  FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 265
           FL K+  + V ++L +G    G +  +D  MN  L+  +     + + +     IRGNN+
Sbjct: 10  FLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIRGNNV 69

Query: 266 RY 271
            Y
Sbjct: 70  LY 71


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 65  NKMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAV---KVTLKNREELQL 235
           N +  +  + K     + + +KN   + GT+TG D  +N  L+ V   + T   +   +L
Sbjct: 10  NTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69

Query: 236 ETLSIRGNNI 265
           +T+ + GN+I
Sbjct: 70  DTILLNGNHI 79


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 152 TITGVDVAMNTHLKAVKVTLKNREELQ 232
           T+ G++VA N H K  +   KNR  +Q
Sbjct: 179 TLKGIEVASNPHFKKTRAPTKNRAAIQ 205


>Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 149 GTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNN 262
           G +TG+   +   L AVK  L+  E+L + +L IR N+
Sbjct: 550 GPVTGIVNNIRAKLAAVKSALQQAEQLGIASLIIRTND 587


>Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 149 GTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNN 262
           G +TG+   +   L AVK  L+  E+L + +L IR N+
Sbjct: 550 GPVTGIVNNIRAKLAAVKSALQQAEQLGIASLIIRTND 587


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 SSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFILLAY 58
           ++RFFK+ F     V M T+T V+  +++    NS      +S I  L S ++  Y
Sbjct: 203 ANRFFKIVFAMSSVVSMLTTTTVMFAFSS----NSESKWDTVSMIMKLISVVIYVY 254


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
           protein F47A4.5 protein.
          Length = 1071

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +1

Query: 139 RCPRNYNWCR--CRHEYAS 189
           RCP+ Y  CR  CRH+ +S
Sbjct: 679 RCPKGYKGCRSNCRHDCSS 697


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,119,959
Number of Sequences: 27780
Number of extensions: 169485
Number of successful extensions: 545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)