Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A02
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   3.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    24   7.3  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   7.3  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    24   9.7  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 DVQLHAWGDSLKETFEQCGMAMFGYM-TELDYVQITEVHTVEAE 276
           DV + A+G  +K+  + C M + G+   +   + ++  HT+  E
Sbjct: 75  DVDISAYGIEIKKVIDPCDMEISGFCPMQTGNIALSGSHTLTGE 118


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 165 MGRQFKGNV*TMRDGDVRIYDRARLCADH 251
           M R+F+ NV T RD +  +  +A    DH
Sbjct: 905 MTREFQANVGTPRDAESTMEKKASSSVDH 933


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 153 NISRVIQILICNRW*NIVIFC 91
           ++ R+I +++ NR+  I++FC
Sbjct: 357 SLERIINMVLSNRYDPIIVFC 377


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 139 HTADVQLHAWGDSLKETFEQCGMAMFGYMTELD 237
           H  D Q + W + L+   E+C  ++ G+   +D
Sbjct: 178 HDFDKQFNVWDEGLRPLVEECD-SVQGFQAAID 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,296
Number of Sequences: 5004
Number of extensions: 28582
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)