Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A02
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098499-2|AAC67396.1|  155|Caenorhabditis elegans Hypothetical ...    64   3e-11
U64603-4|AAO61442.1|  410|Caenorhabditis elegans Serotonin/octop...    29   0.90 
U64603-3|AAM15552.1|  422|Caenorhabditis elegans Serotonin/octop...    29   0.90 
U64603-2|AAB04582.3|  435|Caenorhabditis elegans Serotonin/octop...    29   0.90 
AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical ...    28   2.7  

>AF098499-2|AAC67396.1|  155|Caenorhabditis elegans Hypothetical
           protein C43H8.1 protein.
          Length = 155

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = +1

Query: 88  LTEDHYVLPPITYEYLDHTADVQLHAWGDSLKETFEQCGMAMFGYMTEL 234
           + ED   +    +EYLDH AD+QLH+WG +++E FE C ++MFGYMT+L
Sbjct: 6   MIEDRSEIERRRFEYLDHPADIQLHSWGSTMEEAFEACLVSMFGYMTDL 54



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 266 WKLNADDMMGLLYHLLDELL 325
           WK + D + GLL+  LDE L
Sbjct: 65  WKASGDSLDGLLFQFLDEAL 84


>U64603-4|AAO61442.1|  410|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform c
           protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 363 FYISIKVRP*TGNNNSSSKWYNSPIMSSAFSFHGMDLCDLHIVELCHISEHRH 205
           F++ + V P    +    KW     M S ++   + LC   IV LC IS  R+
Sbjct: 88  FFVGLVVMPLALIDLLFDKWPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRY 140


>U64603-3|AAM15552.1|  422|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform b
           protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 363 FYISIKVRP*TGNNNSSSKWYNSPIMSSAFSFHGMDLCDLHIVELCHISEHRH 205
           F++ + V P    +    KW     M S ++   + LC   IV LC IS  R+
Sbjct: 88  FFVGLVVMPLALIDLLFDKWPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRY 140


>U64603-2|AAB04582.3|  435|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform a
           protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 363 FYISIKVRP*TGNNNSSSKWYNSPIMSSAFSFHGMDLCDLHIVELCHISEHRH 205
           F++ + V P    +    KW     M S ++   + LC   IV LC IS  R+
Sbjct: 88  FFVGLVVMPLALIDLLFDKWPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRY 140


>AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical
           protein H12I13.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 136 DHTADVQLHAWGDSLKETFEQCGMAMFGYMTELDYVQITEVHTVEAER*RHDGTVIP 306
           + T  +++H   +SL+E+FE+   A   Y  ++  VQI  V   +  R  HD  + P
Sbjct: 225 EETLGLRVHIQKNSLRESFEKFFFANDAYSVDVVMVQI--VRLAQDGRKLHDNFLFP 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,491,100
Number of Sequences: 27780
Number of extensions: 161769
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)