Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A01
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 188 2e-49
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 188 3e-49
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 188 3e-49
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 93 1e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 89 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 48 7e-07
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 1.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 2.4
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 2.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.1
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.1
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 3.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 4.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 5.5
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 7.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 24 9.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.5
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 9.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 188 bits (459), Expect = 2e-49
Identities = 85/129 (65%), Positives = 107/129 (82%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQAR 164
Query: 181 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKGWLVERKEGKAEGN 360
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EPTT MPW++GW E K G +G
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGK 224
Query: 361 CLIEALDAI 387
L+EA+D+I
Sbjct: 225 TLLEAIDSI 233
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 188 bits (458), Expect = 3e-49
Identities = 84/129 (65%), Positives = 107/129 (82%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQAR 164
Query: 181 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKGWLVERKEGKAEGN 360
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EPTT MPW++GW E K G +G
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGK 224
Query: 361 CLIEALDAI 387
L+EA+D+I
Sbjct: 225 TLLEAIDSI 233
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 188 bits (458), Expect = 3e-49
Identities = 84/129 (65%), Positives = 107/129 (82%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQAR 164
Query: 181 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKGWLVERKEGKAEGN 360
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EPTT MPW++GW E K G +G
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGK 224
Query: 361 CLIEALDAI 387
L+EA+D+I
Sbjct: 225 TLLEAIDSI 233
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.5 bits (222), Expect = 1e-20
Identities = 43/111 (38%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ D VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R
Sbjct: 338 SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 397
Query: 181 FEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PTTKMPWFKG 321
++E ++S +++++ GYN V ++P+S + G N+ + ++ PW++G
Sbjct: 398 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.4 bits (212), Expect = 2e-19
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Frame = +1
Query: 10 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEE 189
D AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+E
Sbjct: 280 DFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQE 337
Query: 190 IKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPTTK--MPWFKG 321
IK VS + IK +G+ + V FVPIS G N+++ + W+KG
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 47.6 bits (108), Expect = 7e-07
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +1
Query: 10 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEE 189
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E
Sbjct: 141 DGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEME 193
Query: 190 IKKEVSSY 213
+++ +S Y
Sbjct: 194 MRELLSEY 201
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 152 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 253
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 145 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWF 315
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 197 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 346
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 2.4
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 185 RKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVTA 364
RK S+P + L+T P +S P + W C S + W V T
Sbjct: 333 RKLEFDSIPFNCPLITQLFPLISSP-----KEMAWLLLIVCTDSNESWFPVHAYINTKTR 387
Query: 365 LLRPSTP 385
+LRP +P
Sbjct: 388 ILRPRSP 394
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 76 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 216
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 154 TEPPYSESRFEEIKKEVSSYIKK 222
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 196 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKG 321
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 209 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 33
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 32 ATISTAQS 9
+++++ S
Sbjct: 816 NSVTSSTS 823
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 329 LSVKKERLKVTALLRPSTPS 388
+SV K+RL +T PSTPS
Sbjct: 406 VSVAKDRLSLTPSSTPSTPS 425
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 155 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 292
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +1
Query: 148 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 270
DS P + + + + YI+++G P + I+ W
Sbjct: 513 DSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASW 553
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 162 WLSGVHFVYSYNQLLDSECE 103
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 274 GDNMLEPTTKMPWFKGWLVERKEGK 348
GD +L PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,452
Number of Sequences: 5004
Number of extensions: 36274
Number of successful extensions: 156
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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