Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A01
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 214 2e-56
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 214 2e-56
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 142 1e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 94 3e-20
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 81 4e-16
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.001
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.001
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.006
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.006
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.006
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.094
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.29
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 3.6
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 4.7
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 4.7
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 4.7
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 27 4.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 4.7
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 27 4.7
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 6.2
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 214 bits (522), Expect = 2e-56
Identities = 99/130 (76%), Positives = 112/130 (86%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEAR 166
Query: 181 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKGWLVERKEGKAEGN 360
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE ++ MPWFKGW VERKEG A G
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGK 226
Query: 361 CLIEALDAIL 390
L+EALD+I+
Sbjct: 227 TLLEALDSII 236
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 214 bits (522), Expect = 2e-56
Identities = 99/130 (76%), Positives = 112/130 (86%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEAR 166
Query: 181 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKGWLVERKEGKAEGN 360
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE ++ MPWFKGW VERKEG A G
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGK 226
Query: 361 CLIEALDAIL 390
L+EALD+I+
Sbjct: 227 TLLEALDSII 236
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 142 bits (343), Expect = 1e-34
Identities = 63/89 (70%), Positives = 74/89 (83%)
Frame = +1
Query: 124 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPTTK 303
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE ++
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 304 MPWFKGWLVERKEGKAEGNCLIEALDAIL 390
MPWFKGW VERKEG A G L+EALD+I+
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSII 202
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 95.1 bits (226), Expect = 2e-20
Identities = 47/108 (43%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ D A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R
Sbjct: 270 SQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDR 327
Query: 181 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKG 321
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 328 FDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 372
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 95.1 bits (226), Expect = 2e-20
Identities = 47/108 (43%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ D A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R
Sbjct: 288 SQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDR 345
Query: 181 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPTTKMPWFKG 321
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 346 FDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 390
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 94.3 bits (224), Expect = 3e-20
Identities = 45/109 (41%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Frame = +1
Query: 4 RGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRF 183
+ D AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF
Sbjct: 210 QADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERF 269
Query: 184 EEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLE-PT-TKMPWFKG 321
+EI+ +++ +++K+G+NP + +VP SG G + + PT ++ W+ G
Sbjct: 270 KEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYSG 318
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 80.6 bits (190), Expect = 4e-16
Identities = 42/66 (63%), Positives = 49/66 (74%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 180
++ DCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRR 163
Query: 181 FEEIKK 198
+ I++
Sbjct: 164 SDTIQR 169
Score = 42.7 bits (96), Expect = 9e-05
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 188 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVTA 364
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 365 LLRPSTPS 388
R TPS
Sbjct: 211 SSRLLTPS 218
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.001
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +1
Query: 10 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEE 189
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 190 IKKEVSSYIKKIGYNPAAVAFV 255
++ E + G+N A +
Sbjct: 182 VEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.001
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +1
Query: 10 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEE 189
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 190 IKKEVSSYIKKIGYNPAAVAFV 255
++ E + G+N A +
Sbjct: 182 VEMEARELLSLHGFNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.006
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 174
A+ + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 134 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 184
Query: 175 SRFEEIKKEVSSYIKKIGY 231
+R E ++ ++ + + GY
Sbjct: 185 TR-ELVEMDIREQLNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.006
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 174
A+ + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 175 SRFEEIKKEVSSYIKKIGY 231
+R E ++ ++ + + GY
Sbjct: 186 TR-ELVEMDIREQLNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.006
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 1 ARGDCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 174
A+ + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 175 SRFEEIKKEVSSYIKKIGY 231
+R E ++ ++ + + GY
Sbjct: 186 TR-ELVEMDIREQLNEFGY 203
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.094
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 143 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 15
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.29
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 76 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVA 249
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 250 FVPISGWHGDNMLE 291
G+ + ML+
Sbjct: 168 MSLADGYFKEEMLQ 181
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 3.6
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = -2
Query: 302 LVVGSNMLSPCQPEMGTKATAAGL*PIFLM*EETSFLISSNRDSLYG-GSVESILFTPTI 126
+ +GS+ S T ++ P T+F S++ ++ SV + P
Sbjct: 1326 VTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGSTISDVSSVSTTSLAPLS 1385
Query: 125 SCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTAQSP 6
S L +V +S AS+SPVP+ T ST +P
Sbjct: 1386 SSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNP 1425
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 151 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 267
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 224 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVTALL 370
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 186 LKSRLTVWWLSGVHFVYSYN 127
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 134 PTISCLTPSVKASRACSRVCPFFE--IPASNSPVPAATISTA 15
PT+ +TPS K S + R P + P PA+T +TA
Sbjct: 270 PTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTA 311
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 151 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 267
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 220 KIGYNPAAVAFVPISGWHGDNMLEPT 297
K+G F+ +SGW +N+L+PT
Sbjct: 78 KVGRLSVFFGFIFLSGWFMENLLQPT 103
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 264 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 169
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,700
Number of Sequences: 27780
Number of extensions: 199655
Number of successful extensions: 738
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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