Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P24
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   1.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   1.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   2.5  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   3.3  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   4.4  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   5.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.8  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 286 QDIFTLSVESVLKIIEGNNMRITKYTRNPRRLISD 182
           Q  F +  ESV K + G ++R TKY + P +L  D
Sbjct: 243 QGAFAICCESVFKELTGKDLRNTKYGK-PHKLTYD 276


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 405  TIQCRLRFAFGHNMRNGD 458
            T++C  R ++GH  RNG+
Sbjct: 1253 TMRCECRLSYGHTRRNGE 1270


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 204  LRVYLVILILLPSMIFSTLSTERVNMSW 287
            +RV+ VIL  +P++IF   +   V  SW
Sbjct: 1017 IRVHFVILTPMPAVIFCVTAALTVTYSW 1044


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 20  HDFGFTPYNEANKVPSLSHWFHDMIPFYQCCMW 118
           HDF +  +    KV  L+  F+D IP   C  W
Sbjct: 294 HDFPYVAWTRIGKVRELAPEFYDNIP--DCKSW 324


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 321 TSSFNCGWSTLTRTYSPFPLKVY 253
           TSS+N  WS L  +Y   PLK+Y
Sbjct: 205 TSSYNLLWSDLLHSYRQ-PLKLY 226


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 183 TQSCDGRRSNLNVSHPTACSSC 118
           TQ  D   + +N+S PTA  SC
Sbjct: 147 TQLADHLNNKMNISAPTAIQSC 168


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 359 GPVNATHLTSVVAASNNSVPIEVRLRP 439
           GPV   H +S+  +SN+ +  E  LRP
Sbjct: 160 GPVRTNHSSSLSNSSNSLLQTESSLRP 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,581
Number of Sequences: 5004
Number of extensions: 43066
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)