Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P24
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803... 28 4.3
01_05_0728 + 24686642-24687004,24687935-24688008,24689104-246891... 28 4.3
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 27 5.7
01_01_0941 - 7423284-7423366,7423479-7423749,7423844-7423913,742... 27 7.5
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 27 10.0
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212... 27 10.0
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 10.0
03_04_0045 + 16772835-16772876,16772965-16773118,16774219-167742... 27 10.0
>11_04_0254 -
15377689-15378357,15378807-15379241,15380326-15380370,
15380675-15381145
Length = 539
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 379 MCSINRSIDISRNLLESAL--HVQFQLRMVYSHQDIFTLSVESVLKIIE 239
+ S+ + ++ +++ L H++F L + + QD+F +S ++IE
Sbjct: 298 LLSVRKEYGLTEEHVKAILEGHLKFDLHQIINQQDVFIAGTQSSARVIE 346
>01_05_0728 +
24686642-24687004,24687935-24688008,24689104-24689184,
24689256-24689337,24689596-24689693,24689722-24689860,
24691259-24691613,24691923-24692173
Length = 480
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 145 FTSNSLLFLPHAALIERNH 89
F ++L+ LPHAAL RNH
Sbjct: 100 FYLDALMLLPHAALCHRNH 118
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -3
Query: 337 LESALHVQFQLRMVYSHQDIFTLSVESVLKIIEGNNMRITKYTRNPRRLISDA 179
L + LH Q +Y H D+F + + ++EG+N++ R P +++++
Sbjct: 771 LLTLLHDLQQKHQLYHHMDMFLGELLGAVSLVEGSNIK-QSLQRKPISIVANS 822
>01_01_0941 -
7423284-7423366,7423479-7423749,7423844-7423913,
7424034-7424329,7426097-7426642
Length = 421
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 203 VAGIFGDPHIVTFDDLQYTFNGKGEYVLVRVDHP 304
+AGI GD V +D ++ N +YV + +D P
Sbjct: 237 MAGILGDSVQVEWDGVRLRINSFNDYVRLYIDSP 270
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 99 SISAACGRKSKLLDVKHLDLNVVHHKT 179
++ + R+ DVK L++N+VHH++
Sbjct: 92 AVDSVLARREGGADVKDLEINLVHHRS 118
>10_08_0912 -
21520088-21520426,21520534-21520674,21521235-21521294,
21521394-21521493,21521591-21521904,21522253-21522621,
21522993-21523104,21523627-21523787
Length = 531
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 395 PRQKSNV*H*QVHRYF*KLARICIARPVSIADGLLSPGHIH 273
PR + + Q++ + + RI + R + A LSPGH+H
Sbjct: 47 PRHRRSKRQLQLNLHQERSIRIMLDRAIGRASSTLSPGHMH 87
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 317 DVQCRFEQVSRNIYGPVNATH--LTSVVAASNNSVPIEVRLRPQHAQWRYRL 466
D CR + +S + N+ L S VA SN VP+ R+ A W+ L
Sbjct: 1622 DAFCRLQDLSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRAL 1673
>03_04_0045 +
16772835-16772876,16772965-16773118,16774219-16774248,
16774752-16774882,16774960-16775034,16775315-16775482,
16775837-16775984,16776808-16776953
Length = 297
Score = 26.6 bits (56), Expect = 10.0
Identities = 23/71 (32%), Positives = 29/71 (40%)
Frame = -3
Query: 346 RNLLESALHVQFQLRMVYSHQDIFTLSVESVLKIIEGNNMRITKYTRNPRRLISDAVL*W 167
+ LLE Q Q S Q L V V+ GNN ++ NP R I DA L
Sbjct: 226 KELLEQQQQQQQQKPPPASAQSPTVLQVHMVI----GNNRSNPQFVANPLRPIFDAKLVA 281
Query: 166 TTFKSKCFTSN 134
+ + C T N
Sbjct: 282 ASSEQMCKTGN 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,281
Number of Sequences: 37544
Number of extensions: 292162
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -