Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P23
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   153   2e-38
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   151   4e-38
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   3.0  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   4.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.9  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   9.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    24   9.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  153 bits (370), Expect = 2e-38
 Identities = 70/124 (56%), Positives = 88/124 (70%)
 Frame = +2

Query: 71  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 250
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 251 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLFIVLD 430
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 431 PAQD 442
           P  D
Sbjct: 130 PRAD 133


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  151 bits (367), Expect = 4e-38
 Identities = 66/125 (52%), Positives = 89/125 (71%)
 Frame = +2

Query: 68  HLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXX 247
           ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK        
Sbjct: 8   NILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVI 67

Query: 248 XXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLFIVL 427
              E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L +V 
Sbjct: 68  ATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVT 127

Query: 428 DPAQD 442
           DP  D
Sbjct: 128 DPRAD 132


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 15  LYAFSRNSYKRNDVGRISTCLRSARKM*LRCLRRPPIWERKMLISRWRRTFINAVVT 185
           L  F   S K N +  I  C+++   + +  +    +W     +S+W+RT +  VVT
Sbjct: 290 LLTFLCYSEKPNGINAIMKCMKNFANLKVESMNVFDLW-----LSQWKRTLLEKVVT 341


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 442 ILSRVQNDEQHWFAECGLDLVSKCTRSETSSNWCCASV 329
           ++S +  +E+  + +  ++L+ +    E  + WCC S+
Sbjct: 254 LISMITIEERIQYLQKEIELIQELHEMEPENRWCCESL 291


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 199 NYVRTVTTAFINVRLHLEINIFRSQMGGRRKHLSHIFLAERKQVLILPTSL 47
           +YV  V +  I  +L   +N  +S +G     LSH  LA   + ++L  ++
Sbjct: 182 HYVNQVPSLSIEAKLSNIVNASKSGIGPPPSLLSHATLARPSESMVLSNNI 232


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 421  DEQHWFAECGLDLVSKCTRSETSSNWCCASVG 326
            D  HW A+  L  ++KC  +E    W C   G
Sbjct: 1240 DVAHW-AQSSLSEMAKCFHAELYKLWVCLLEG 1270


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 250 DNSTSSEYKLFPCTPKINYVRTVT 179
           DNS SS    FP +PK++   TV+
Sbjct: 154 DNSISSNSDNFPPSPKVDTSNTVS 177


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 151  LEINIFRSQMGGRRKHLSHIFLAERKQVLILPTSL 47
            +++ I  SQ       L H+++A R  + +LP  L
Sbjct: 1105 IKLLITLSQQSSNEMELGHVYVALRSVIHLLPNEL 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,437
Number of Sequences: 5004
Number of extensions: 31621
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)