Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P23
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   148   2e-36
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   146   9e-36
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60...    29   2.2  
04_04_0157 + 23165638-23166633                                         28   2.9  
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409...    27   5.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  148 bits (358), Expect = 2e-36
 Identities = 69/123 (56%), Positives = 85/123 (69%)
 Frame = +2

Query: 74  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 253
           L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK          
Sbjct: 12  LSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVA 71

Query: 254 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLFIVLDP 433
            E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EP L I+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 434 AQD 442
             D
Sbjct: 132 RTD 134


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  146 bits (353), Expect = 9e-36
 Identities = 68/123 (55%), Positives = 84/123 (68%)
 Frame = +2

Query: 74  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 253
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK          
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 254 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLFIVLDP 433
            E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EP L I+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 434 AQD 442
             D
Sbjct: 132 RTD 134


>05_01_0091 +
           602481-602721,602819-602901,603431-603560,604188-604267,
           604353-604442,605019-605143,605702-605762,605839-605889,
           605976-606053,606136-606241,606333-606478,607054-607176
          Length = 437

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 442 ILSRVQNDEQHWFAECGLDLVSKCTRSE 359
           +LS V +D QH + EC LD +SKC  ++
Sbjct: 317 VLSPVASDPQHSWLECRLD-ISKCDSNQ 343


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 222 FSHVRRRLITCVPSPRRL 169
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>02_02_0625 -
           12339623-12339707,12339938-12340062,12340844-12340996,
           12342037-12342102,12343374-12343443,12343523-12343593,
           12343664-12343795,12344042-12344130,12344189-12344270,
           12344743-12344811,12345641-12345730,12345856-12345918,
           12346158-12346217
          Length = 384

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 154 HLEINIFRSQMGGRRKHLSHIFLAERKQVLI 62
           HL  ++   ++GG  +HL H+F + R   LI
Sbjct: 47  HLRSDVGCGEIGGNNRHLDHLFDSSRFSSLI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,059
Number of Sequences: 37544
Number of extensions: 246713
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)