Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P23
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   156   6e-39
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    27   6.1  
U00043-1|AAC77509.3|  515|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  156 bits (379), Expect = 6e-39
 Identities = 70/122 (57%), Positives = 89/122 (72%)
 Frame = +2

Query: 77  ALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXX 256
           AL+EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEK           
Sbjct: 9   ALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAV 68

Query: 257 EDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLFIVLDPA 436
           E+PADV V+S+R + QRA+LKFAAHTGAT I GRF+PG  TNQIQ  F+EP L ++ DP 
Sbjct: 69  ENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPR 128

Query: 437 QD 442
            D
Sbjct: 129 ID 130


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 PPIWERKMLISRWRRTFINAVVTVRT 194
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 PPIWERKMLISRWRRTFINAVVTVRT 194
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 212  YAED*LRAYRHHGVYKRTSPSGN*HFPLPNGWSPQA 105
            +A+D    Y HH V ++ SPS N +     G+SP A
Sbjct: 1838 WADDHDLTYTHHDVVRQESPSFNCNISPIKGYSPPA 1873


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 EDPADVFVISSRAFGQRAVLKFAAHTGATPIA 352
           EDP  V  +S   F +R ++KF A  G  PI+
Sbjct: 13  EDPV-VSQVSGHIFDRRLIVKFIAENGTDPIS 43


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 43   NATMSGGLALA----CAQRG-RCD*DACGDHPFGSGKC*FPDGDV 162
            N+T+SG    A    CA++  +CD  A   + FGS  C  PDG V
Sbjct: 2300 NSTLSGSETCADIDECAEKSHKCDRVATCRNTFGSHVCTCPDGHV 2344


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 432 GSKTMNSIGS--RNAAWIWLVNAPGVKRPAIGVAP 334
           G+ TM ++G   R A+ +  V APG    A+G AP
Sbjct: 288 GASTMTAVGGAPRGASTMTAVGAPGGGASALGAAP 322


>U00043-1|AAC77509.3|  515|Caenorhabditis elegans Hypothetical
           protein T26A5.6 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 103 LSHIFLAERKQVLILPTSLRL*ELRL 26
           L  +FL ERK + I PT LRL E  L
Sbjct: 182 LFKLFLLERKVLFIAPTGLRLGETML 207


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
            W02B8.2 protein.
          Length = 1256

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 269  QLDPPRRQQHEQRVQAFPMYAED*LRAYRHHGVY 168
            +L PPRR  +   V A  + A + L AY++HG++
Sbjct: 1115 KLMPPRRSDYP--VSAHAITANEILLAYQNHGIF 1146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,064
Number of Sequences: 27780
Number of extensions: 188740
Number of successful extensions: 470
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)