Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   2.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   2.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   8.8  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    19   8.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   8.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   8.8  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 154 CASTAVGCYFWIYK 195
           C   A  C+FW Y+
Sbjct: 116 CLFVASNCFFWSYQ 129


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 154 CASTAVGCYFWIYK 195
           C   A  C+FW Y+
Sbjct: 116 CLFVASNCFFWSYQ 129


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 190 KSKNNNRPQSTRTST 146
           +  NNN P +T  +T
Sbjct: 125 RGNNNNTPSATNNNT 139


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 137 LSIYIDKNYSVVFILLVKIYLYRA 66
           L+ +++  Y ++F +    YL++A
Sbjct: 290 LTSFLNNFYFIIFQVFESFYLHKA 313


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 190 KSKNNNRPQSTRTST 146
           +  NNN P +T  +T
Sbjct: 73  RGNNNNTPSATNNNT 87


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 190 KSKNNNRPQSTRTST 146
           +  NNN P +T  +T
Sbjct: 256 RGNNNNTPSATNNNT 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,299
Number of Sequences: 336
Number of extensions: 838
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)