Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   1.9  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   1.9  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    23   7.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    23   7.7  

>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 172 GCYFWIYKIHFGK 210
           GC+FW YK   GK
Sbjct: 325 GCFFWTYKFLHGK 337


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 113 YSVVFILLVKIYLYRAQ 63
           YSV ++L++K+ LYRA+
Sbjct: 397 YSVQYMLVIKVQLYRAR 413


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 205 QSGFYKSKNNNRPQSTRTSTRGDSLYISIKTTQSFL 98
           Q  FY+   N+R          + LY  +K +Q+FL
Sbjct: 84  QDAFYQLLENSRHDFKELVLHTNQLYEPVKRSQNFL 119


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 251 TKGDYYASKQAQHS 210
           T G+YY  K+ QHS
Sbjct: 721 TGGEYYLKKEVQHS 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,818
Number of Sequences: 5004
Number of extensions: 14172
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)