Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    27   2.2  
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531...    26   5.1  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    25   8.9  
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    25   8.9  
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85...    25   8.9  

>06_01_1101 -
          9044679-9045320,9045484-9045890,9046020-9046274,
          9046375-9046498,9047237-9047289,9047388-9047648,
          9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 52 GVSARRCGEWWWGR 11
          G +ARR G WWW R
Sbjct: 7  GAAARRKGGWWWWR 20


>05_04_0375 +
          20750170-20751011,20751707-20751865,20752894-20753146,
          20753287-20753316
          Length = 427

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 61 GKPGVSARRCGEWWWGRGL 5
          G P VSA+R   WWW   L
Sbjct: 25 GSPRVSAQRRRWWWWAAPL 43


>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 82  YIFIGLKGKPGVSARRCGEWW 20
           Y+ IG  GK   +A RCG WW
Sbjct: 433 YLRIGSSGKR--NATRCGIWW 451


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 169 VGCYFWIYKIHFGKE 213
           V CYFW Y ++F +E
Sbjct: 215 VECYFWSYSMYFEEE 229


>03_01_0107 +
           849489-850652,850745-850835,850926-851083,851180-851231,
           852373-852452,852540-852633,852711-853231,854087-854202,
           854242-854293
          Length = 775

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 56  TGGQRSAV--WRVVVGERP 6
           TGG+   V  WRVV GERP
Sbjct: 288 TGGEDGVVRVWRVVEGERP 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,525,365
Number of Sequences: 37544
Number of extensions: 81505
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)