Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D78586-1|BAA11423.1| 2225|Homo sapiens multifunctional protein C...    27   8.1  
BC065510-1|AAH65510.1| 2225|Homo sapiens carbamoyl-phosphate syn...    27   8.1  
AC013413-1|AAY24293.1| 2151|Homo sapiens unknown protein.              27   8.1  

>D78586-1|BAA11423.1| 2225|Homo sapiens multifunctional protein CAD
            protein.
          Length = 2225

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 244  ATTTRVNKLNTLFQSGFYKSKNNNRPQSTRTSTRGDSLYISIKTTQSF 101
            +T  ++ K N L   G YK+K+   P      + G SLY S+ T   +
Sbjct: 1305 STGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFY 1352


>BC065510-1|AAH65510.1| 2225|Homo sapiens carbamoyl-phosphate
            synthetase 2, aspartate transcarbamylase, and
            dihydroorotas protein.
          Length = 2225

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 244  ATTTRVNKLNTLFQSGFYKSKNNNRPQSTRTSTRGDSLYISIKTTQSF 101
            +T  ++ K N L   G YK+K+   P      + G SLY S+ T   +
Sbjct: 1305 STGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFY 1352


>AC013413-1|AAY24293.1| 2151|Homo sapiens unknown protein.
          Length = 2151

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 244  ATTTRVNKLNTLFQSGFYKSKNNNRPQSTRTSTRGDSLYISIKTTQSF 101
            +T  ++ K N L   G YK+K+   P      + G SLY S+ T   +
Sbjct: 1231 STGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFY 1278


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,282,510
Number of Sequences: 237096
Number of extensions: 472252
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)