Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical p...    25   7.9  

>Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical
           protein H02I12.3 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 205 QSGFYKSKNNNRPQSTRTSTRGDSLYISIK 116
           Q+G   SKN+  P S   STR  ++Y  +K
Sbjct: 258 QNGQNGSKNSKTPASRSYSTRSTNVYSKLK 287


>U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical
           protein C50E3.14 protein.
          Length = 231

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 124 IYIESRRESTCASTAVGC 177
           ++I+ + +S+C +TA GC
Sbjct: 141 VWIDGKHQSSCPTTATGC 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,932,203
Number of Sequences: 27780
Number of extensions: 76992
Number of successful extensions: 189
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)