Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P22
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   2.6  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   3.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   6.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 275 DTTTDRPLTKGDYYAS-KQAQHSFPKWIL 192
           D   D PL +GD     KQA  S P W++
Sbjct: 556 DPEEDAPL-RGDLVRILKQANQSVPDWMM 583


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 226 NKLNTLFQS--GFYKSKNNNRPQSTRTSTRGDSLY 128
           N +NT+ Q    F  SKN +  + T TS+ GD+ Y
Sbjct: 25  NLVNTVLQPRPSFELSKNGD--EWTFTSSSGDNTY 57


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 226 NKLNTLFQS--GFYKSKNNNRPQSTRTSTRGDSLY 128
           N +NT+ Q    F  SKN +  + T TS+ GD+ Y
Sbjct: 27  NLVNTVLQPRPSFELSKNGD--EWTFTSSSGDNTY 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 65  EPYKDIFLLIK*KRLSSF 118
           EPY DIF  I  +R + F
Sbjct: 220 EPYPDIFFNITLRRKTLF 237


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 260 RPLTKGDYYASKQAQ 216
           R L+KGD++  K  Q
Sbjct: 281 RTLSKGDFFGEKALQ 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,926
Number of Sequences: 438
Number of extensions: 951
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)