Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P21
         (501 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          34   0.003
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   0.27 
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    23   5.8  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   7.7  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 438 NRGQSSLHYACSKGHKEVVKLLIDFEANVNATDILGATPLHR 313
           +R ++ LH A S   + +VK L+   A ++  D  G TPLHR
Sbjct: 782 DRNETGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHR 823



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 251 LNITDSTGSTPLHLACEED-REAVACILVKAGCNTKIMNKEKQTPL 117
           L+  D  G+TPLH A  E+  + V  +L++ G      N +  T L
Sbjct: 810 LHYCDYRGNTPLHRAVVENVPDMVRLLLLQGGLRLDCTNDDGLTAL 855



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 251 LNITDSTGSTPLHLACEEDREAVACILVKAGCNTKIMNKEKQTPL 117
           L++ +    T LHLA   + E +   L+ AG      +    TPL
Sbjct: 777 LDLPNDRNETGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPL 821


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 311 ATAQGRSNIVDILVACSDIDLNITDSTGSTPLHLACEEDREAVACILVKAG 159
           A   G       ++  +D+D+N  +S G TPL +A   +  ++  +L++ G
Sbjct: 434 AVEHGHLEKARTILESTDVDVNSLNSDGLTPLDVAVLSNNRSMTKMLLQQG 484


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 190 SLSSSQARCNGVEPVESVILRSISEQATNISTILLLPCAVASV 318
           ++SSSQ   NG  PV+ + L S S  A +   +  +   V++V
Sbjct: 339 NISSSQLFGNGTVPVQQIQLYSRSRVANSQIKVTKMLLIVSTV 381


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 146 IMNKEKQT-PLDVCSVKLKN 90
           +MNK K + P++ C VKLK+
Sbjct: 352 LMNKVKSSEPVEQCPVKLKS 371


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,112
Number of Sequences: 2352
Number of extensions: 6909
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)