Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P20
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   4.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   4.5  

>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 377 SETTSNKLLRNIHDPKVVKPDTKYISNINDT*MFSRVMFICPDIFENK 234
           SE T N  L +       K   K+     D  M + + F  PDIFEN+
Sbjct: 368 SEATYNVQLNSFFSRTPDKGTRKFTFKSLDETMLAPLGFFRPDIFENE 415


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 277 FHGLCLFVLTYLKINLFYNNV 215
           F G CLFVL  L I  F +NV
Sbjct: 486 FVGSCLFVLAGLLITTFVSNV 506


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 388 CKIVLRQQVTNCSVTFTTRKL*NLTRNIFL 299
           C++ L   + +CSV FTT K  N  + +FL
Sbjct: 118 CQVSLSSVLYHCSVIFTT-KAENFEKRLFL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,312
Number of Sequences: 5004
Number of extensions: 27244
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)