Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P20
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583...    27   4.3  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    27   5.6  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    27   7.5  
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971...    26   9.9  

>12_01_0684 +
           5828947-5829012,5831123-5832103,5832200-5832326,
           5832623-5832705,5832752-5832917,5833337-5833399,
           5833624-5833733,5834227-5834276,5834528-5834664,
           5835180-5835281,5835871-5835988,5836575-5836627,
           5836710-5836813,5836910-5836972,5837375-5837503,
           5837508-5837605,5838446-5838500,5839260-5839311,
           5839996-5840113,5841906-5842035,5842156-5842437
          Length = 1028

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 289 ILKCFHGLCLFV 254
           I KCFHGLC FV
Sbjct: 151 IRKCFHGLCTFV 162


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 VYFFYNCIVCYPFRREYDLIQI 168
           +YFFY  ++CY F   + L  I
Sbjct: 205 IYFFYKVLMCYTFLLHFSLSSI 226


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 380 CSETTSNKLLRNIHDPKVVKPDTKYISNI 294
           C++ +  K+L  ++  K VKPDT + + I
Sbjct: 59  CAQRSDGKVLNCVNATKAVKPDTLFSARI 87


>02_02_0393 -
           9711835-9712388,9712438-9712657,9713007-9713271,
           9713409-9713476,9713587-9714209,9714307-9714462,
           9714551-9714648,9714734-9714825,9714928-9715017
          Length = 721

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 362 NKLLRNIHDPKVVKPDTKYISNINDT*MF-SRVMFICPDI 246
           N+LLR  H P +  P    ++ + D+  F S     CP +
Sbjct: 456 NRLLREKHKPDISAPGVSILAAVGDSYKFMSGTSMACPHV 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,588
Number of Sequences: 37544
Number of extensions: 128999
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)