Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P17
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   140   9e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   140   9e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   140   9e-35
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    55   7e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.059
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   1.3  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  140 bits (340), Expect = 9e-35
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +2

Query: 2   HEAVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQ 181
           +  VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F 
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414

Query: 182 EFPPLGRFAVRDMRQTVAVGVIKAV 256
           ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  140 bits (340), Expect = 9e-35
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +2

Query: 2   HEAVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQ 181
           +  VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F 
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414

Query: 182 EFPPLGRFAVRDMRQTVAVGVIKAV 256
           ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  140 bits (340), Expect = 9e-35
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +2

Query: 2   HEAVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQ 181
           +  VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F 
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414

Query: 182 EFPPLGRFAVRDMRQTVAVGVIKAV 256
           ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   HEAVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQ 181
           +  V+  HTA     FA++  K+D+ T + ++  P     G   I  L    P+C+E F+
Sbjct: 577 YSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFE 635

Query: 182 EFPPLGRFAVRDMRQTVAVG-VIKAVN 259
           ++  +GRF +RD   TVAVG V+K ++
Sbjct: 636 DYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 158 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 250
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 135 MAASPDLMDLGLSSVDLPVRRSTFS 61
           ++ +PDL D+ LSSVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 108 NPLNLVMPPLSTWFPPSPCVWS---PSRNSHPSVVSPCVT*GRRSPSV**RL*TSRKQVV 278
           +PL+ + P L  WF     V+S   P+R+S  +   P +   + SP+        +++V+
Sbjct: 707 SPLSELHPQLREWFSSKQSVYSLQYPTRDSIIAFFQPILELIKASPTELPGGIPRKRRVL 766

Query: 279 AKSPKLPKKPP 311
            + P  P  PP
Sbjct: 767 PELPLAPDPPP 777


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = -2

Query: 300 SAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTRLTMAA 127
           S  +VTLPPPAS   ++F T T T  + S ++     G+ + +++        +  ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241

Query: 126 SPDLMDLGLSSVDLPVRRSTFSLIS 52
           S  L    ++S   PV  S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 315 PLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTA 205
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 336 NSASYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH 163
           ++  ++  L+A    L  L   + L  T+F T   T   +  +  R +G ++WK ST+
Sbjct: 178 STIQFYTTLIAIIGELYHLQCLSPL--TSFFTSCVTPKTILESPLRKQGSHNWKTSTN 233


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 190 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 101
           ++FL+ + +  LGGN   + G+T   G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,788
Number of Sequences: 5004
Number of extensions: 47490
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)