Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P16
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    28   3.3  
Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 152 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTKA 3
           ++ + P S H  + PP VQ    PPC    T    +     + P C  T A
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTPA 236


>Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical
           protein F13D2.3 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 276 SWLALVLRLLPWWPFSSVV*HY 341
           S++ ++ RL+P+WPF +V+ HY
Sbjct: 229 SYVRMMSRLIPFWPF-TVLNHY 249


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 64  QYTHFLKIYSEVIRIVLLRR 5
           QY HFLK  S V++I++ RR
Sbjct: 91  QYPHFLKRKSNVLQILIQRR 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,956,692
Number of Sequences: 27780
Number of extensions: 123604
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)