Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P14
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    23   5.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    23   7.0  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    22   9.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    22   9.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    22   9.3  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    22   9.3  

>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 11  KTAIVEERRLPSPK 52
           KTAI+++R+ P+P+
Sbjct: 129 KTAIIDDRKRPNPR 142


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 58  FFLRRWQSSFFDDCSLRLV 2
           F   +W SS FDD   RL+
Sbjct: 156 FLTLKWNSSLFDDDLARLL 174


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 112 LQSSFIGGCSHLSSVVAVFFLRRWQSSFFDDC 17
           L S     C + +   A+ F+R++  S F DC
Sbjct: 484 LSSILEAACLNNNDKFAIAFVRKYTLSRFSDC 515


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 106 SSFIGGCSHLSSVVAVFFLRRWQS 35
           +SF   CS L+  V+ F L  W+S
Sbjct: 192 ASFEKACSELNLDVSSFHLVNWES 215


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 82  HLSSVVAVFFLRRWQSSFFDDCS 14
           HL+S  +V +L +W+   +D C+
Sbjct: 297 HLNSDGSVEYLVKWKQLLYDFCT 319


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 67  VAVFFLRRWQSSFFDDCSL 11
           + +   R WQ++ FDD  L
Sbjct: 525 ILISLTRNWQTTVFDDSDL 543


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 2   HEAKTAIVEERRLPSPKKED 61
           HE K  +  +  LP  KKED
Sbjct: 42  HEGKDTVSVDVELPGVKKED 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,554
Number of Sequences: 5004
Number of extensions: 3820
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)