Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P14
         (112 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    27   2.1  
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609...    26   3.8  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    25   6.6  
06_03_0244 + 18637406-18637511,18637576-18638123                       25   8.7  
04_01_0255 - 3395548-3396129,3396203-3397834                           25   8.7  

>10_08_0850 +
           21050164-21050189,21050874-21050979,21051186-21051257,
           21051775-21051828,21052077-21052184,21052653-21052802,
           21052914-21053258,21053361-21054801,21054844-21055675,
           21057060-21057325,21057530-21059603,21060172-21060442,
           21060556-21060990
          Length = 2059

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 112 LQSSFIG-GCSHLSSVVAVFFLRRWQSSFFDDC 17
           L+SS +  G   LS V +VFF+  W +  F DC
Sbjct: 481 LRSSLMWMGAVELSLVCSVFFICEWATCTFRDC 513


>07_03_1631 -
           28258897-28259984,28260518-28260772,28260861-28260975,
           28261097-28261149,28261238-28261498,28262122-28262175,
           28262294-28262536,28262830-28263073,28263877-28263909
          Length = 781

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   GEDCNRRRKKTAIAEERRLQPPMKDD 84
           G    RRR +  IAEE R+ P ++D+
Sbjct: 687 GSLSRRRRVRFEIAEEERIDPQVRDE 712


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 112 LQSSFIG-GCSHLSSVVAVFFLRRWQSSFFDDCSLRLV 2
           LQSS +  G    S + +VFFL  W +  + DC   L+
Sbjct: 494 LQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLL 531


>06_03_0244 + 18637406-18637511,18637576-18638123
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   TRRRLQSSKKEDCHRRRKKTATTDER*LQPP 95
           +R RL + +    HRR    A  D R L PP
Sbjct: 69  SRGRLGARRSTAAHRRPSPPAAADHRCLPPP 99


>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 15  LQSSKKEDCHRRRKKTATTDER*LQPPMK 101
           ++  KKE   +++KK   T E+   PPMK
Sbjct: 459 VEEKKKEKEEKKKKKKKGTAEKKPDPPMK 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,964
Number of Sequences: 37544
Number of extensions: 32727
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)