Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P14
         (112 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    26   3.1  
AC024762-5|AAF59478.2|  335|Caenorhabditis elegans Hypothetical ...    25   7.1  
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 110 AVIFHRRLQSSFIGGCSLLSSAMAV 36
           A+I H+    SFIG C+LL  A  +
Sbjct: 148 AIIEHKTFTKSFIGSCTLLIIAFVL 172


>AC024762-5|AAF59478.2|  335|Caenorhabditis elegans Hypothetical
           protein Y38F2AL.1 protein.
          Length = 335

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 83  SSFIGGCSLLSSAMAVFF 30
           S+FIG C+   S++A+FF
Sbjct: 178 STFIGACACCHSSLALFF 195


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   RRLQSSKKEDCHRRRKKTATTDER*LQPPMKDDC 110
           R+ + SK+    +R+++ +++D+R       DDC
Sbjct: 180 RKRKKSKESKKEKRKRRHSSSDDRSASSDSDDDC 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,761
Number of Sequences: 27780
Number of extensions: 25524
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)