Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P14
         (112 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   3.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   5.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 21  SSKKEDCHRRRKKTATTDE 77
           +S KE   ++ +KTATT +
Sbjct: 784 NSTKETTPKKERKTATTTQ 802


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 9   RRLQSSKKEDCHRRRKKT 62
           R+   S+KE   RRR++T
Sbjct: 397 RQTPPSRKESGRRRRRRT 414


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 67  VAVFFLRRWQSSFFDD 20
           +  +F  R+Q  FFD+
Sbjct: 412 ITEYFEHRYQGKFFDE 427


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 67  VAVFFLRRWQSSFFDD 20
           +  +F  R+Q  FFD+
Sbjct: 380 ITEYFEHRYQGKFFDE 395


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -1

Query: 91  GCSHLSSVVAVFFLRRWQSSFFDDCSL 11
           G   +   V +FF    +++FF+ C +
Sbjct: 233 GLMEIIKFVNIFFPGGKKTTFFESCGV 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,392
Number of Sequences: 438
Number of extensions: 327
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)