Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P13
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 1.3
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 25 2.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 2.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 24 2.9
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 23 5.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 23 5.1
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi... 23 6.7
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 23 8.8
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 23 8.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 23 8.8
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 ARGNNEKLQEELDRERAKYSELLKK 75
A+ KL+E+L RAKY E L++
Sbjct: 160 AKKEESKLEEDLRNARAKYEESLEE 184
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 2.2
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 16 EKLQEE-LDRERAKYSELLKKHKQVTEHLGSMLIENTNLCXXXXXXXXXXXXXXXXXNEL 192
+KLQ+E D+E E KK ++ TEHL +N +L N L
Sbjct: 76 DKLQQENKDQELKNIEESYKKLEEKTEHLSD---DNVSLEKRVEYLETENTKLVKTLNSL 132
Query: 193 TEQCNQTIENLNTNEK 240
+ Q + + N K
Sbjct: 133 NSEFLQLLRKIAINVK 148
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 2.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 13 NEKLQEELDRERAKYSELLKKHKQVTEHLGSMLIENTNL 129
+ KL EEL A YS+ + ++ E L + + E NL
Sbjct: 296 DSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFDNL 334
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 70 STVQNIWHVPCR 35
STV+N+ HVPC+
Sbjct: 37 STVKNLQHVPCK 48
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 120 VLDQHTTEVFGDLFVFL 70
+L HTT+ GD+ VFL
Sbjct: 618 ILQIHTTQPAGDILVFL 634
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 162 LGRFGQ*RFFTQIGV-LDQHTTEVFGDLFVFLQQ 64
L FG F T+ + H +FG +F F+QQ
Sbjct: 183 LDNFGVVTFGTEAPIKAPDHPVTIFGRIFKFIQQ 216
>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 7 GNNEKLQEELDRERAKYSELLKKHKQVTEHLGS 105
G N +QE+LD E + E + + E LGS
Sbjct: 52 GLNRSMQEQLDLEEQEREEANQDTELDEEELGS 84
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 4 RGNNEKLQEELDRERAKYSELLKKHKQVTEHLGS 105
R + E + E +R+R Y E + + V +HL S
Sbjct: 267 REDIEAMDIEKERKRENYEEYKQVDRIVAKHLNS 300
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 22.6 bits (46), Expect = 8.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 4 RGNNEKLQEELDRERAKYSELLKKHKQVTEHLGSMLIE 117
RG NE E ++ Y+E + + QVT+ LG+ IE
Sbjct: 14 RGKNEN---ENEKRELTYAEEGQMYAQVTKMLGNGRIE 48
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 22 LQEELDRERAKYSELLKKHKQ 84
L + LD +R Y+E K H Q
Sbjct: 34 LNDSLDEQRNAYNEHCKNHDQ 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.303 0.122 0.327
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,813
Number of Sequences: 5004
Number of extensions: 13258
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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