Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P13
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0140 - 41387166-41388488 29 0.51
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 0.90
01_06_1778 - 39820552-39821991 27 1.6
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 2.1
12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702 26 3.6
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 26 3.6
05_01_0553 + 4849535-4849553,4850727-4851913 26 3.6
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 26 4.8
09_02_0045 + 3479503-3480285 26 4.8
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 25 6.3
07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370 25 6.3
07_01_0619 + 4588779-4588811,4590173-4590245,4590341-4590389,459... 25 6.3
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 25 6.3
12_01_0264 - 1929022-1930212 25 8.4
11_01_0266 - 2010572-2011879 25 8.4
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 25 8.4
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 25 8.4
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 25 8.4
>01_07_0140 - 41387166-41388488
Length = 440
Score = 29.1 bits (62), Expect = 0.51
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 187 RLTSSPVYPWPLRPVALFHTNWCSRSAYYRGVR 89
RL + PV W + + FH++ + A+Y G R
Sbjct: 272 RLVTGPVMRWEFKRLVEFHSDTFHQPAFYEGAR 304
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 16 EKLQEELDRERAKYSELLKKHKQVTEHLGSMLIE 117
+++ + L A Y+EL K+H + E GS+L E
Sbjct: 558 DRISDTLQNLEAHYAELEKRHSDLQEEKGSVLDE 591
>01_06_1778 - 39820552-39821991
Length = 479
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 22 LQEELDRERAKYSELLKK 75
LQEELD+ERAK + L +K
Sbjct: 87 LQEELDKERAKLARLRQK 104
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 32 NSTGNVP-NILNC*--RNTNKSPNTSVVC*SRTPICVKK 139
++T P N L+C RNT+ PN + +C TP V+K
Sbjct: 556 DATSTTPSNYLHCHAQRNTSNPPNFNEICSEATPKAVQK 594
>12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702
Length = 501
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 28 EELDRERAKYSELLKKHKQVTEHLGS 105
EE+ R + KYSEL KK+K HLGS
Sbjct: 257 EEIRRSQ-KYSELAKKYK-FPHHLGS 280
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 1 ARGNNEKLQEELDRERAKYSELLKKHKQVTE 93
+RG EE R RAKY LL+ +K++ E
Sbjct: 28 SRGGGVGGGEEAYRARAKYKNLLQDYKELLE 58
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 13 NEKLQEELDRERAKYSELLKKHKQVTEHLGSMLIENTNL 129
+ +L+ EL +ER K L++ +KQ E ++ + N L
Sbjct: 310 SHELKSELAKEREKNEALVQLYKQTKESHANLEVANAQL 348
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 22 LQEELDRERAKYSELLKKHKQVTEHLGSMLIENTNLCXXXXXXXXXXXXXXXXXNELTEQ 201
L+ +L + A+ +L +H ++TE ++ +N+ LC L E+
Sbjct: 739 LKSKLQLKEAESEKLKYEHMKITEENRELVNQNSTLCEEVAYAKELASSAAVELKNLAEE 798
Query: 202 CNQ-TIEN 222
+ +++N
Sbjct: 799 VTKLSVQN 806
>09_02_0045 + 3479503-3480285
Length = 260
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 13 NEKLQEELDRERAKYSELLKKHKQVTEHLGSMLIENTNL 129
+ +L+ EL +ER K L++ +KQ E ++ + N L
Sbjct: 118 SHELKSELVKEREKNEALVRLYKQTKESHANLDVANAQL 156
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 4 RGNNEKLQEELDRERAKYSELL 69
RG+ E L+ EL +E+ Y EL+
Sbjct: 577 RGSIETLESELQKEKTMYEELV 598
>07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370
Length = 210
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 16 EKLQEELDRERAKYSELLKKHKQVTEHLGS 105
E Q++LD+ + K SELL + +Q+ + + S
Sbjct: 133 ESSQKKLDKLKQKESELLAQLEQIRQEMAS 162
>07_01_0619 +
4588779-4588811,4590173-4590245,4590341-4590389,
4590473-4590596,4591320-4591370
Length = 109
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 16 EKLQEELDRERAKYSELLKKHKQVTEHLGSM 108
EKL+ E + KY+ELL+ HK+ L +
Sbjct: 67 EKLKAEKLDLQLKYNELLETHKETCRQLDEL 97
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 190 VRLTSSPVYPWPLRPVALFHTNWCSRSAYYR 98
+++ + PV+ W L VA F +RS++YR
Sbjct: 220 LKIAALPVFCWALDHVARFLRRNFARSSFYR 250
>12_01_0264 - 1929022-1930212
Length = 396
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 190 VRLTSSPVYPWPLRPV 143
++L P +PW LRPV
Sbjct: 181 IKLPHPPCFPWKLRPV 196
>11_01_0266 - 2010572-2011879
Length = 435
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 190 VRLTSSPVYPWPLRPV 143
++L P +PW LRPV
Sbjct: 244 IKLPHPPCFPWKLRPV 259
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 7 GNNEKLQEELDRERAKYSELLKKHKQVTEHLG 102
GN+EKLQE ++ ++ EL+K + + G
Sbjct: 664 GNDEKLQERANQIQSDLEELVKSLNEQCKRYG 695
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 31 ELDRERAKYSELLKKHKQVTEHLGSM 108
EL+R++ + + ++Q+TEH GS+
Sbjct: 29 ELERQQQLLATCTRLYQQLTEHFGSL 54
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 16 EKLQEELDRERAKYSELLKKHKQV 87
+K +EEL+R++A+Y+E K + +
Sbjct: 134 KKKEEELERKKAEYAEKAKNKEAI 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.303 0.122 0.327
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,942
Number of Sequences: 37544
Number of extensions: 76958
Number of successful extensions: 142
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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